PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC012843.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | G2-like | ||||||||
Protein Properties | Length: 309aa MW: 32703.7 Da PI: 9.8315 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.7 | 1.8e-30 | 120 | 173 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl EcC012843.70 120 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 173 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.24E-20 | 117 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.56 | 117 | 176 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 119 | 178 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-24 | 121 | 173 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 123 | 172 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | ||||
GO:0006904 | Biological Process | vesicle docking involved in exocytosis | ||||
GO:0016579 | Biological Process | protein deubiquitination | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0000145 | Cellular Component | exocyst | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004843 | Molecular Function | thiol-dependent ubiquitin-specific protease activity | ||||
GO:0005215 | Molecular Function | transporter activity | ||||
GO:0005506 | Molecular Function | iron ion binding | ||||
GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | ||||
GO:0020037 | Molecular Function | heme binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MREDDGGNWF TKWQVELPPP EELTPLSQSL ITPDLALAFD IGRGPSSSNN SISVVGAKQR 60 HLLPSSTPLP QQLSSSSRDS KTGAAAARQP GPVDFADSGD LGSGGGAGGG GDEPARTLKR 120 PRLVWTPQLH KRFVDAVAHL GIKNAVPKTI MQLMSVDGLT RENVASHLQK YRLYLRRMQG 180 LSGGGGGSSS ADAATERLFA SAPVPPHFLH PGRPSSDHFL ALQHHQHLAA EAAAAAAIPQ 240 YRRQVGHFGL PPNGQFEHPL LQSRQGQIAH SMGAAMSMHN PIQSSVGESD SVKGSGGRKV 300 LTLFPTGDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-33 | 120 | 176 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018732280.1 | 0.0 | PREDICTED: transcription factor PCL1 | ||||
Swissprot | O22210 | 2e-62 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A059DHZ7 | 0.0 | A0A059DHZ7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010055683.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 4e-71 | G2-like family protein |
Publications ? help Back to Top | |||
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