PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC012513.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Dof
Protein Properties Length: 344aa    MW: 36904.2 Da    PI: 9.765
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC012513.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-3966126262
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                   +e  lkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+s+
  EcC012513.10  66 PEPGLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSK 126
                   56789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3250115IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3270124IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.71170124IPR003851Zinc finger, Dof-type
PROSITE patternPS01361072108IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVFSSIPVYL DPPNWPQQAN QQSGASSEIP QLPLPPPPLP AGGGGTGSIR PGSMADRARL  60
AKVPQPEPGL KCPRCDSTNT KFCYFNNYSL TQPRHFCKAC RRYWTRGGAL RNVPVGGGCR  120
RNKRSKGSRS KSPVTTERQA ASGSTTSGSG VGVSSTAAAT DIIGHLVPPP SQLPFLPPLH  180
NLNDFISSDM GLNFGPGAQS QLAVARRGVV PDVEFQIGSS SGGGSQLLPN GLSDHQWRLN  240
QMHHQVQQFP FFANLQTPSY PLEGEVNASE LLRNKPLDHS TGITHQMGST VKMEENQRLN  300
LSRNLNFSSG VSSSSNNNEQ FWGGNNNAWT DLSGFSSSSA SHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030970.10.0PREDICTED: dof zinc finger protein DOF3.6 isoform X2
TrEMBLA0A059A8P60.0A0A059A8P6_EUCGR; Uncharacterized protein
STRINGXP_010030969.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.11e-38Dof family protein