PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC012324.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 524aa MW: 57935.8 Da PI: 6.4597

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC012324.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.8e-07	273	294	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H EcC012324.10 273 FCTICGKGFKRDANLRMHMRGH 294 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.29E-5	270	297	No hit	No description
SMART	SM00355	0.0026	272	294	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.03	272	299	IPR007087	Zinc finger, C2H2
Pfam	PF12874	0.0011	273	294	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.1E-6	273	323	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	274	294	IPR007087	Zinc finger, C2H2
SMART	SM00355	53	321	354	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	22	359	381	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MDLEERLRAE TWGKPSSVND LPQRVPPDRQ TPFPNFASHK NLQKREDQDP SISNYGMRIE 60 PSFSEFNRPS ECQPPLPSNP ISQDRGVQMN DILQLGKTQE WDPKAMLNNL SFLEQKIHQL 120 QELVHAIVGR RGPVLGRPDE LVAQQQQLIT ADLTSIIIQL ISTAGSLLPS VKNSLSSAST 180 PPIRQLGQLG GILNNSGSGI GLDSNLVLPS QGGSKVPDQS NQVDPMDQSA IDNLEDHESK 240 DDEDGDEGEN LPPGSFEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT 300 PAALAKPHKE AGSEMMLIKR YSCPYAGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSYT 360 CSRCNTKKFS VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHITLFQG HTPAIPFDEN 420 KGGLSLQGEH NEDTNKVGNV SFSFGSSTPS SGGVQNIMED VKGNVDDPSS FFSPLSFEAS 480 NFGGFNEFTR SAFDDSEGAF SFLLQASCNY PQKNGGQSSS NNLE

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MDLEERLRAE TWGKPSSVND LPQRVPPDRQ TPFPNFASHK NLQKREDQDP SISNYGMRIE  60
PSFSEFNRPS ECQPPLPSNP ISQDRGVQMN DILQLGKTQE WDPKAMLNNL SFLEQKIHQL  120
QELVHAIVGR RGPVLGRPDE LVAQQQQLIT ADLTSIIIQL ISTAGSLLPS VKNSLSSAST  180
PPIRQLGQLG GILNNSGSGI GLDSNLVLPS QGGSKVPDQS NQVDPMDQSA IDNLEDHESK  240
DDEDGDEGEN LPPGSFEILQ LEKEEILAPH THFCTICGKG FKRDANLRMH MRGHGDEYKT  300
PAALAKPHKE AGSEMMLIKR YSCPYAGCKR NKDHKKFQPL KTILCVKNHY KRTHCDKSYT  360
CSRCNTKKFS VIADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHITLFQG HTPAIPFDEN  420
KGGLSLQGEH NEDTNKVGNV SFSFGSSTPS SGGVQNIMED VKGNVDDPSS FFSPLSFEAS  480
NFGGFNEFTR SAFDDSEGAF SFLLQASCNY PQKNGGQSSS NNLE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062013.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Refseq	XP_010062014.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Refseq	XP_010062015.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	0.0	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	W8VY02	0.0	W8VY02_9MYRT; Putative C2H2 type transcription factor
STRING	XP_010062013.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-170	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]