PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC012018.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 307aa    MW: 32854.2 Da    PI: 6.5069
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC012018.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.71e-294105197
        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                   +C++C+vlr++C +dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql++++ 
  EcC012018.10   4 SCNGCRVLRKGCGDDCSIRPCLqwiksPDSQAHATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRILNPIYGSVGLLWDGSWQLCHAAM 100
                   6***********************************************************************************************9 PP

        DUF260  93 elall 97 
                   e++l 
  EcC012018.10 101 EAVLS 105
                   98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.7093109IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003723Molecular FunctionRNA binding
GO:0004601Molecular Functionperoxidase activity
GO:0005506Molecular Functioniron ion binding
GO:0005509Molecular Functioncalcium ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0050664Molecular Functionoxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCGDDCS IRPCLQWIKS PDSQAHATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRILNP IYGSVGLLWD GSWQLCHAAM EAVLSGVPIT PIASVAAPPL  120
KAYDIRHIPR QEDPAAAAAM MAAVGEANRA RPIRSGRFKR PGARTKAQRH PAPPPPAVEW  180
CDEESNRSPS HDSSLSHQSV LGAANAGVGF GGGDSKETES NSMVSAETTT TTVAEPPQPL  240
KPEPEPESAG AAGEAEREDG ASAEPESEVG LELTLGFKPA SREDHVIPVK KRRFEQRDEA  300
CSMELGL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061881.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8862e-90LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A059BS580.0A0A059BS58_EUCGR; Uncharacterized protein
STRINGXP_010061881.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-75LOB domain-containing protein 41