PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC011826.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 246aa MW: 27293.6 Da PI: 4.6197 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 121.4 | 1.1e-37 | 128 | 246 | 2 | 126 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lLlecA a+s ++l +a+++L +l ++asp+g + +R++ayf++A+++r+ +s+ +++ p + + ++ +a+++f+ vsP++kf+h+t EcC011826.10 128 LTLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERIVAYFAKAMSSRVINSWLGICL--PLVDYK-----SVHSAFQVFNTVSPFVKFAHFT 217 579*******************************9999*********************994..444443.....456899**************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWp 126 NqaIlea+++ +rvHi+D+di+qGlQWp EcC011826.10 218 SNQAILEAFHRRDRVHIVDLDIMQGLQWP 246 ****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 26.029 | 101 | 246 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-35 | 128 | 246 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLEEGFEVVN RDLEMTPSLE LWDSSGFSDP ASGRCAGSER NELSEWVEQV TRQLIDDLPE 60 TPGGGADRGF HTDSEMASED SIPSILSDSR PRKALRWNAI HHHLEGNSDS VHWGNEASPS 120 ESNGLGLLTL LLECAVAISV DNLGEAHRML LELTQMASPY GPSCAERIVA YFAKAMSSRV 180 INSWLGICLP LVDYKSVHSA FQVFNTVSPF VKFAHFTSNQ AILEAFHRRD RVHIVDLDIM 240 QGLQWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-40 | 133 | 246 | 25 | 144 | Protein SCARECROW |
5b3h_A | 4e-40 | 133 | 246 | 24 | 143 | Protein SCARECROW |
5b3h_D | 4e-40 | 133 | 246 | 24 | 143 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010037969.1 | 1e-159 | PREDICTED: protein SCARECROW-like | ||||
TrEMBL | B9SV25 | 8e-97 | B9SV25_RICCO; DELLA protein GAIP, putative | ||||
STRING | XP_010037969.1 | 1e-158 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16005 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 6e-41 | GRAS family protein |