PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC011288.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 638aa    MW: 71359 Da    PI: 5.7677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC011288.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.64.7e-1242556221373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   lv+lL++c+ea+ s++   +++++a+l ++asp+g+++ R++ay+teALa r++r +++++++ +p+e + +  +++ +al+l+++vsPi+kf h+t
  EcC011288.10 255 LVSLLTACVEAIGSKNIPVINHFIAKLGDHASPRGSTISRVIAYYTEALALRVTRLWPHVFHITTPREVD-RVDEDSGMALRLLNQVSPIPKFIHFT 350
                   6899***********************************************************9999998.4567778999**************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el etg+rLa fA ++++pfef++ v++rled++l++L
  EcC011288.10 351 SNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRSNPPSHVRITGIGE----SKQELVETGDRLAVFAGSFNLPFEFHP-VVDRLEDVRLWML 442
                   ****************************************************....***************************.7************ PP

          GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                   +vk+gE++aVn+v qlh++l +    +   +++L+l++s++P v+ ++eqea hn++s+  r++++l+yysalfds++++lp es +r+k+E+  ++
  EcC011288.10 443 HVKEGESVAVNCVCQLHKTLYDGSGGA--LRDFLRLIRSTNPVVLLMAEQEAHHNTSSLEVRVINSLRYYSALFDSIHSSLPLESAARVKIEEL-FA 536
                   *******************95543333..589************************************************************98.** PP

          GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve...eesgslvlgWkdrpLvsvSaW 373
                   rei+n+vaceg++r erh+++ +Wr+ +e+  F+ ++ +e++  q ++ll++++ ++ + v    +++++l+l W+d+pL++vSaW
  EcC011288.10 537 REIRNIVACEGSDRLERHQSFDEWRKLMEQGAFRCLETTERERIQSQMLLKMYDvDEDFIVSdrgQDQAALTLSWQDQPLYTVSAW 622
                   ******************************************************888899996666699999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.458229599IPR005202Transcription factor GRAS
PfamPF035141.6E-121255622IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000469Biological Processcleavage involved in rRNA processing
GO:0005978Biological Processglycogen biosynthetic process
GO:0005506Molecular Functioniron ion binding
GO:0008878Molecular Functionglucose-1-phosphate adenylyltransferase activity
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
GO:0051087Molecular Functionchaperone binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
PSMSTQRLDL PCSFSRKENS RPQSLRPVSL SVEKTSIEAT TTTCSLKQHI RLPPLATTSQ  60
GSIEGRREVK GEFWERGKSL KRFADRSSVD ESYVSRAKRK RHGNSNEKPD YVGEGGENLS  120
LGQLSGGSFW FQPSFSASPI PFSITCSQDD EERVCFVPSE VVSSPMPLSN NPWVESIVTK  180
ITDLGEKDVE ISHGPVKEDS GSSASSDSQS LALRLNENMS EHEAGNGSGN PYPHEGFSLE  240
ASEENHHGEH HEFELVSLLT ACVEAIGSKN IPVINHFIAK LGDHASPRGS TISRVIAYYT  300
EALALRVTRL WPHVFHITTP REVDRVDEDS GMALRLLNQV SPIPKFIHFT SNEILLRAFE  360
GKDRVHIIDF DIKQGLQWPS LFQSLASRSN PPSHVRITGI GESKQELVET GDRLAVFAGS  420
FNLPFEFHPV VDRLEDVRLW MLHVKEGESV AVNCVCQLHK TLYDGSGGAL RDFLRLIRST  480
NPVVLLMAEQ EAHHNTSSLE VRVINSLRYY SALFDSIHSS LPLESAARVK IEELFAREIR  540
NIVACEGSDR LERHQSFDEW RKLMEQGAFR CLETTERERI QSQMLLKMYD VDEDFIVSDR  600
GQDQAALTLS WQDQPLYTVS AWVPADVAGS SSSFSQPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6926262426380Protein SCARECROW
5b3h_A4e-6926262425379Protein SCARECROW
5b3h_D4e-6926262425379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053331.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A059CGM10.0A0A059CGM1_EUCGR; Uncharacterized protein
STRINGXP_010053331.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein