PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC011260.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 388aa MW: 43151.8 Da PI: 9.576

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC011260.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	3.9e-32	214	267	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ EcC011260.10 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 267 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	211	267	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	212	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-23	214	267	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	215	266	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009887	Biological Process	organ morphogenesis
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0009956	Biological Process	radial pattern formation
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010158	Biological Process	abaxial cell fate specification
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNAK SASWRRTAEE DVNLGFWKRA LDSRSHHSLP SSMAAKNDAR 60 FDLSLSNPRA GHNAVGGNTI PEGNNNVSYN HLHQGGNHIH SFQNQSQYSN SNHHHHMHQH 120 HHSVLQHQPQ GLSQELGFLR PIRGIPVYHQ NSSSAFPFAT QLQHLDPSPI HHPNSSNSLT 180 NSANSIASNL CHSHGLVRSR FLPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT 240 PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRAAANSSG QTDVFDNGSS GETSDDLVIE 300 VANPKRPELG RHDYQDTNQH GLWSNSSREA WLHGKPKDSG GSTPSVEKDM DPKISSYERT 360 SEISSPSVNL TGTSPMKLNL EFTLGRPH

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNAK SASWRRTAEE DVNLGFWKRA LDSRSHHSLP SSMAAKNDAR  60
FDLSLSNPRA GHNAVGGNTI PEGNNNVSYN HLHQGGNHIH SFQNQSQYSN SNHHHHMHQH  120
HHSVLQHQPQ GLSQELGFLR PIRGIPVYHQ NSSSAFPFAT QLQHLDPSPI HHPNSSNSLT  180
NSANSIASNL CHSHGLVRSR FLPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT  240
PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDRAAANSSG QTDVFDNGSS GETSDDLVIE  300
VANPKRPELG RHDYQDTNQH GLWSNSSREA WLHGKPKDSG GSTPSVEKDM DPKISSYERT  360
SEISSPSVNL TGTSPMKLNL EFTLGRPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-16	215	269	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-16	215	269	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-16	215	269	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-16	215	269	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-16	215	269	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010055266.1	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q93WJ9	7e-53	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A059C028	0.0	A0A059C028_EUCGR; Uncharacterized protein
STRING	XP_010055266.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	5e-73	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]