PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC011072.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 343aa    MW: 38389.4 Da    PI: 8.54
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC011072.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ l ++v+ +G g+W++ ar  g++Rt+k+c++rw++yl
     EcC011072.10 24 RGPWTVEEDLALMNYVASHGEGRWNSLARSAGLRRTGKSCRLRWLNYL 71
                     89********************************************97 PP
2Myb_DNA-binding51.13.2e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
     EcC011072.10  77 RGNITLEEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 120
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.871975IPR017930Myb domain
SuperFamilySSF466891.35E-3120118IPR009057Homeodomain-like
SMARTSM007171.0E-142373IPR001005SANT/Myb domain
PfamPF002491.7E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-222578IPR009057Homeodomain-like
CDDcd001673.20E-112671No hitNo description
PROSITE profilePS5129418.03276126IPR017930Myb domain
SMARTSM007174.7E-1476124IPR001005SANT/Myb domain
PfamPF002491.3E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2279125IPR009057Homeodomain-like
CDDcd001676.88E-1181120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDVRGRSRCS SNIQSEEDVM GLKRGPWTVE EDLALMNYVA SHGEGRWNSL ARSAGLRRTG  60
KSCRLRWLNY LRPDVRRGNI TLEEQLLILD LHSRWGNRWS KIAQYLPGRT DNEIKNYWRT  120
RVQKHAKQLK CDVNSKQFKD AMRYLWMPRL VERIQAAAAA SASTTTTSPG GSIVATAAAA  180
AYKTKNSSSS NNTTSSCNGN NNNGPNYRPI NGNLEQPVLP DISTKNNEFT SARLMQSYYT  240
PENSSTAASS DSLGTQVSPF SDVANPYGIS VYETPNPGYV QANQAAYQES SLFSPPSESF  300
NYGSEFFQAM DQNNQLWLDS GDFSDNLWNA ENVLYLQQQL NSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-252211825120MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018724846.10.0PREDICTED: transcription factor MYB108
TrEMBLA0A059DAN30.0A0A059DAN3_EUCGR; Uncharacterized protein
STRINGXP_010045365.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.13e-85myb domain protein 108