PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC011030.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 417aa MW: 47999.3 Da PI: 9.0557

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC011030.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.6	1.9e-109	40	414	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+a+s+gd++ a++lL++++e++sp+gd qRla+yf+++L+arl+++ +++ + +++ +++++ ++ l+a++l ++P+lk+s EcC011030.20 40 LRTLLILCAQAISTGDFRTANELLKQIRENSSPSGDGSQRLAHYFANGLEARLLGNEPRTQHFISSLVARRTSAADLLKAYHLHISTCPFLKLSICF 136 5789**********************************************************999999999******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 aN +Il+ +e+++++HiiDf+ G+QWp L+q+L+sR+egp +lRiTg++ p++g +e++ee g+rL+k++e+++vpfef ++++++e+++le EcC011030.20 137 ANYMILRIAEKATTLHIIDFGFAFGFQWPILIQKLSSRSEGPCKLRITGIELPQAGfrPAERIEEAGRRLKKYCERFNVPFEFYCIASRHWESIKLE 233 ***************************************************9*************************9999**** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +L+++++E++aVn+ + ++llde+v + +rd+vL+l+++++P+++v++ + ++ns+ F++rf al sa++d+++a l +s++r + Erel EcC011030.20 234 DLKIQSNETVAVNCLDRFKNLLDETVGDNCPRDAVLNLIRQIKPDIFVHTVRSGSYNSPFFATRFRAALFDLSAFYDMFDAILDGDSKQRFVFEREL 330 ********************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 g+ei+nv+aceg+er+er et+++W+ r ++aGFk++pl+++ +k ++ ++ ++ + + ++e+ +++++gW++r ++ S+W EcC011030.20 331 YGQEIMNVIACEGSERVERPETYKQWQVRHMRAGFKALPLDQELMKLFRSKMKACYHKDFALDEDGNWMLQGWRGRIIFCSSCW 414 ****************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.874	14	395	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.6E-107	40	414	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MQKAPEKRRI WGGELCCLLR GSNRGRGRGK KQGSEYNVDL RTLLILCAQA ISTGDFRTAN 60 ELLKQIRENS SPSGDGSQRL AHYFANGLEA RLLGNEPRTQ HFISSLVARR TSAADLLKAY 120 HLHISTCPFL KLSICFANYM ILRIAEKATT LHIIDFGFAF GFQWPILIQK LSSRSEGPCK 180 LRITGIELPQ AGFRPAERIE EAGRRLKKYC ERFNVPFEFY CIASRHWESI KLEDLKIQSN 240 ETVAVNCLDR FKNLLDETVG DNCPRDAVLN LIRQIKPDIF VHTVRSGSYN SPFFATRFRA 300 ALFDLSAFYD MFDAILDGDS KQRFVFEREL YGQEIMNVIA CEGSERVERP ETYKQWQVRH 360 MRAGFKALPL DQELMKLFRS KMKACYHKDF ALDEDGNWML QGWRGRIIFC SSCWVPT

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MQKAPEKRRI WGGELCCLLR GSNRGRGRGK KQGSEYNVDL RTLLILCAQA ISTGDFRTAN  60
ELLKQIRENS SPSGDGSQRL AHYFANGLEA RLLGNEPRTQ HFISSLVARR TSAADLLKAY  120
HLHISTCPFL KLSICFANYM ILRIAEKATT LHIIDFGFAF GFQWPILIQK LSSRSEGPCK  180
LRITGIELPQ AGFRPAERIE EAGRRLKKYC ERFNVPFEFY CIASRHWESI KLEDLKIQSN  240
ETVAVNCLDR FKNLLDETVG DNCPRDAVLN LIRQIKPDIF VHTVRSGSYN SPFFATRFRA  300
ALFDLSAFYD MFDAILDGDS KQRFVFEREL YGQEIMNVIA CEGSERVERP ETYKQWQVRH  360
MRAGFKALPL DQELMKLFRS KMKACYHKDF ALDEDGNWML QGWRGRIIFC SSCWVPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-42	47	416	26	380	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043539.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	1e-166	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A059D484	0.0	A0A059D484_EUCGR; Uncharacterized protein
STRING	XP_010043539.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-167	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]