PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC010651.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 347aa MW: 38506.9 Da PI: 6.6738

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC010651.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++++ g+ R+ k+c++rw +yl EcC010651.10 14 KGPWTPEEDIVLVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.9	1.5e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l EcC010651.10 67 RGSFTDQEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.563	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.09E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.54E-11	16	61	No hit	No description
PROSITE profile	PS51294	24.252	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-24	65	117	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.82E-10	69	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGRPPCCDKT GVKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGSF TDQEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ 120 GQANPDDDDH NHHPQGFNAT SHSNPKGQWE RKLQTDIHTA KQALYEALSL DNQHSFLNET 180 TTALGDGGGV CNRPPLQESS YASSTKNIAR LLEGWMKSSP ISGKIKVETA ARSANVSNKM 240 ATAAGSRRTS EGGVDGVATP ECLDSLFSFN SSNSDVSQSV SADENNVNLT PETSTIFQEE 300 SKPRLESNDN HQVPIKLLEK WLLDDAAAQA LQDDYLMDMA LDQDALF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGRPPCCDKT GVKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGSF TDQEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
GQANPDDDDH NHHPQGFNAT SHSNPKGQWE RKLQTDIHTA KQALYEALSL DNQHSFLNET  180
TTALGDGGGV CNRPPLQESS YASSTKNIAR LLEGWMKSSP ISGKIKVETA ARSANVSNKM  240
ATAAGSRRTS EGGVDGVATP ECLDSLFSFN SSNSDVSQSV SADENNVNLT PETSTIFQEE  300
SKPRLESNDN HQVPIKLLEK WLLDDAAAQA LQDDYLMDMA LDQDALF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-26	14	116	27	128	MYB TRANSFORMING PROTEIN
1mse_C	6e-26	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	6e-26	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037166.1	0.0	PREDICTED: myb-related protein 306
Swissprot	P81392	1e-118	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A059A523	0.0	A0A059A523_EUCGR; Uncharacterized protein
STRING	XP_010037166.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	5e-98	myb domain protein 94

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]