PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC010552.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 501aa    MW: 55469.2 Da    PI: 6.7729
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC010552.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.91.4e-951345012374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++ L+e+A+a+ +g    a+ +L+rls   +   ++ q+l  y++ AL++r+      +y   p+ e     ++e+l + + ++++sP++ +++ +a
  EcC010552.10 134 EQSLVEAATAIYEGRVDVASVILTRLSGVPNLISNSKQKLMGYMLSALKSRVRP----VYYPPPVAELF---TEEHLLSARSLYDMSPCFWLGFNAA 223
                   578**************************************************9....77655555555...79999999***************** PP

          GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   N aIlea++++   +++H+iDfdi+  +Q+  Ll+aL+ s+++++ +l+iT++++ + + +e+l+ +g+rL+++A++ gv++ fn+ v+k+l++l+ 
  EcC010552.10 224 NLAILEAASEQpstNKLHVIDFDIGWKGQYNHLLHALSiSQAGNQSTLKITTLAD-SFNGEERLRMIGDRLSEVAAKKGVRLVFNI-VSKKLSELSR 318
                   *********9999999**********************77779999*********.55599************************9.8********* PP

          GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                   ++L ++p+E+laVnl+++l+r++d+svs+e++r+e+L+ vk+l P+vv++ eqe++ n+++F  r+ eal yy al++s+e ++pr+++e++  E+ 
  EcC010552.10 319 DSLGCEPDEVLAVNLAFKLYRMPDDSVSVENPRNELLRRVKGLAPRVVTLLEQEMNGNTAPFTVRVEEALAYYGALLESIECTVPRDKSEQVRAEEG 415
                   ************************************************************************************************* PP

          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    l++++ n+v ceg++r+er+e +e+Wr+r+e+aGF+  pl++++  + +  lr    + g++v+ee+g ++lgW++r+L+++SaWr
  EcC010552.10 416 -LSQKLGNLVGCEGRDRVERCEVFEEWRARMEMAGFELKPLGQHVGPSLEECLRFWVsNLGFTVKEENGGVCLGWRGRTLTVASAWR 501
                   .****************************************************9988799**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.245107480IPR005202Transcription factor GRAS
PfamPF035145.0E-93134501IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MERSAWPKSL SSSRKREIQE LCGQNPKKLR DAFDAHSQTG DDPRQPLFAG DLVVRVLGSF  60
SSNTQSLSSG SESYEVFQVP SNALVSSEVS KGSESVKCPV QRSPVENAKP PVQRSPVESV  120
KPPVQRSPVP ILCEQSLVEA ATAIYEGRVD VASVILTRLS GVPNLISNSK QKLMGYMLSA  180
LKSRVRPVYY PPPVAELFTE EHLLSARSLY DMSPCFWLGF NAANLAILEA ASEQPSTNKL  240
HVIDFDIGWK GQYNHLLHAL SISQAGNQST LKITTLADSF NGEERLRMIG DRLSEVAAKK  300
GVRLVFNIVS KKLSELSRDS LGCEPDEVLA VNLAFKLYRM PDDSVSVENP RNELLRRVKG  360
LAPRVVTLLE QEMNGNTAPF TVRVEEALAY YGALLESIEC TVPRDKSEQV RAEEGLSQKL  420
GNLVGCEGRD RVERCEVFEE WRARMEMAGF ELKPLGQHVG PSLEECLRFW VSNLGFTVKE  480
ENGGVCLGWR GRTLTVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3816850138375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727388.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-135SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DD350.0A0A059DD35_EUCGR; Uncharacterized protein
STRINGXP_010043392.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134SCARECROW-like 8