PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC010131.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 339aa MW: 37433.4 Da PI: 6.7203

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC010131.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	254	295	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L++l+P+ + K++ +++LekA+ Y+k Lq EcC010131.20 254 AKNRRERISERLKILQDLVPNgN------KVDLVTMLEKAISYVKFLQ 295 69*****************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-14	244	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-12	245	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.046	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.83E-11	251	299	No hit	No description
SMART	SM00353	2.2E-11	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	255	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015693	Biological Process	magnesium ion transport
GO:0016021	Cellular Component	integral component of membrane
GO:0015095	Molecular Function	magnesium ion transmembrane transporter activity
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDLIDSRLGL LQPPHSYSKD GNNNKETPPQ LSDLSSQGSY GYDEYQKLGF EEEDNLEKTT 60 ALMSKNFAPS VCGPSMDALK FRAMNNRPEG VHHQPLINFK SNGGYENFRQ ASGSLLSFQQ 120 SQTVDLKNSD CFGWKDDGIM SNYNYHNLRQ IDPKSSSDHP RIVEDVNCYQ SSSTYVVHNA 180 VLKHGNSSSN WLYSEATAVA DSVQESGAQE AGFHKRAYTG ENAQTSKKQC TSASKSSSKS 240 KSPSSPKDPQ SVAAKNRRER ISERLKILQD LVPNGNKVDL VTMLEKAISY VKFLQLQVKV 300 LATDEFWPAQ GGKAPDISQV KEAIDAILSS QRDGSSSSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062245.1	0.0	PREDICTED: putative transcription factor bHLH086
Swissprot	Q9FJ00	1e-65	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A059BUN5	0.0	A0A059BUN5_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010062245.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	3e-55	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]