PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC009748.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 313aa MW: 35010.1 Da PI: 5.0089

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC009748.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	268.4	2.4e-82	12	312	75	373
GRAS 75 seelaalklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLak 167 ++++ +++ ++++sP++k+++++aN aI ea++++ +++H+iDfdi+ +Q+++Ll+aL+ R+ +++ +l+ T++++ + + e + +g+r ++ EcC009748.20 12 KDHVLSVQSLYDISPCFKLGFMAANLAIAEAASEQpstNKLHVIDFDIGWEGQYLNLLHALSIRQaGNQSTLKFTTLAD---SFNVEERMVGDRVSE 105 677888999**********************9999999********************956667*****...34666789*** PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264 +A+++gv++ fn+ v ++l++l+ ++L ++ +E+l+Vnl+++l+r++ esvs e++rde+L++vk+l+P+vv++veqe++ n+++F r+ eal yy EcC009748.20 106 LAAKMGVRLVFNI-VRQKLSELSRDSLGCEADEVLVVNLAFKLYRMPGESVSAENTRDELLRCVKGLEPQVVTLVEQEMNGNTAPFPVRVEEALAYY 201 ********9.799**************************************************************************** PP GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg...yrveeesgs 357 al++s+e ++p es+er+ E+ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+ pl+ ++ ++ +ll+ + +v+ee+g EcC009748.20 202 GALLESFEYTMPWESSERARAEEG-LSRKLGNSVACEGRDRVERCEVFGKWRARMGMAGFQLKPLGRHMPDSLMALLHCLVwN-SdpiVNVKEENGG 296 ********************.****************************************99999999987743.33579**** PP GRAS 358 lvlgWkdrpLvsvSaW 373 +++gW++r+Lv++S W EcC009748.20 297 FCFGWRSRTLVVASPW 312 *************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.796	1	290	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.2E-80	12	312	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
DNPPPVVELF TKDHVLSVQS LYDISPCFKL GFMAANLAIA EAASEQPSTN KLHVIDFDIG 60 WEGQYLNLLH ALSIRQAGNQ STLKFTTLAD SFNVEERMVG DRVSELAAKM GVRLVFNIVR 120 QKLSELSRDS LGCEADEVLV VNLAFKLYRM PGESVSAENT RDELLRCVKG LEPQVVTLVE 180 QEMNGNTAPF PVRVEEALAY YGALLESFEY TMPWESSERA RAEEGLSRKL GNSVACEGRD 240 RVERCEVFGK WRARMGMAGF QLKPLGRHMP DSLMALLHCL VWNSDPIVNV KEENGGFCFG 300 WRSRTLVVAS PWC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-30	4	312	62	374	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010060571.1	1e-169	PREDICTED: scarecrow-like protein 8
Swissprot	Q9FYR7	1e-110	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A059DIP4	1e-168	A0A059DIP4_EUCGR; Uncharacterized protein
STRING	XP_010060571.1	1e-169	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4350	28	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-106	SCARECROW-like 8