PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC009637.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 274aa MW: 30786.2 Da PI: 4.9679

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC009637.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	241.9	2.7e-74	8	273	109	373
GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204 +++H+iDfdi+ +Q+ +Ll aL+ + +++ +l+iT++++ + ++ e+l+ +g+rL+ +A+ ++v++ fn+ v+++l++l+ ++L ++p+E+laV EcC009637.30 8 TNKLHVIDFDIGWEGQYDNLLVALSMLQaRNQSTLKITTLAD-SINDVERLRMLGDRLSLLAADTRVRLVFNI-VSQKLSELSRDSLGCEPDEVLAV 102 4799*******************65548889*****.6679*********************9.8****************** PP GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 nl+++l+r++desvs e++rde+L++vk l P+vv++veqe+d n+++F r+ eal yy al++s+e ++p es+er+ E+ l+r++ n vace EcC009637.30 103 NLAFKLYRMPDESVSAENTRDELLRCVKALAPQVVTLVEQEMDGNTAPFPMRVEEALAYYGALLESFEYTMPWESSERARAEEG-LSRKLGNSVACE 198 ********************************************************************************.******** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg...yrveeesgslvlgWkdrpLvsvSaW 373 g++r+er++ ++kWr+r+++aGF+ pl+ ++ +++ + l+ + + ++v+ee+g +++gW++r+L+ +SaW EcC009637.30 199 GRDRVERCKVFGKWRARMGMAGFELKPLGRHVPDSVMASLHCLAwN-SdpiFNVKEENGGFCFGWRSRTLIIASAW 273 *************************99988888777777733.3356*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	33.014	1	251	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-72	8	273	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
ATSEQPSTNK LHVIDFDIGW EGQYDNLLVA LSMLQARNQS TLKITTLADS INDVERLRML 60 GDRLSLLAAD TRVRLVFNIV SQKLSELSRD SLGCEPDEVL AVNLAFKLYR MPDESVSAEN 120 TRDELLRCVK ALAPQVVTLV EQEMDGNTAP FPMRVEEALA YYGALLESFE YTMPWESSER 180 ARAEEGLSRK LGNSVACEGR DRVERCKVFG KWRARMGMAG FELKPLGRHV PDSVMASLHC 240 LAWNSDPIFN VKEENGGFCF GWRSRTLIIA SAWC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-25	7	273	107	374	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018727388.1	1e-142	PREDICTED: scarecrow-like protein 8
Swissprot	Q9FYR7	5e-94	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A059DD98	1e-142	A0A059DD98_EUCGR; Uncharacterized protein
STRING	XP_010067047.1	1e-141	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	2e-96	SCARECROW-like 8