PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC009637.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 404aa MW: 43570.6 Da PI: 6.5251

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC009637.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	144.1	1.3e-44	116	329	2	222
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++ L+++A+a+ + + a ++L rls + p g + q+l y++ AL++rl+ + + p+ e +++++ +++ ++++sP++k+++++a EcC009637.20 116 KQSLVKAATAIYEVRVAVALEILRRLSAMPKPMGYSKQKLMEYMLSALKSRLSP----VDNPPPVVELF---TKDHVLSVQSLYDISPCFKLGFMAA 205 578************************************************9....55555555554...89999999************* PP GRAS 99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 N aI eav ++ +++H+iDfdi+ +Q+++Ll+aL+ R+ +++ +l+ T++++ + + + + +g+r +++A+++gv++ fn+ v ++l++l+ EcC009637.20 206 NLAIAEAVLEQpstNKLHVIDFDIGWEGQYLNLLHALSIRQaGNQSTLKFTTLAD---SFNVAERMVGDRVSELAAKMGVRLVFNI-VRQKLSELSR 298 ****99988899********************956667*****...345566789**************9.799*** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsles 222 ++L ++ +E+l+Vnl+++l+r++desvs EcC009637.20 299 DSLGCEADEVLVVNLAFKLYRMPDESVSAGR 329 ***********************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	24.294	89	404	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.7E-42	116	329	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MGRSAWPKNL SASRKRAIQE LCGQNPKKLR DVFDAHSQTG DDPRQPVFAE DLIVSVLGSF 60 SNTQSLLSGT ESYEVFQVPS NAFVTSEVSE GSESIRSPVE SVKTPVQRSP VFILWKQSLV 120 KAATAIYEVR VAVALEILRR LSAMPKPMGY SKQKLMEYML SALKSRLSPV DNPPPVVELF 180 TKDHVLSVQS LYDISPCFKL GFMAANLAIA EAVLEQPSTN KLHVIDFDIG WEGQYLNLLH 240 ALSIRQAGNQ STLKFTTLAD SFNVAERMVG DRVSELAAKM GVRLVFNIVR QKLSELSRDS 300 LGCEADEVLV VNLAFKLYRM PDESVSAGRA PPVLEGAGAA GGDAGGAGDE REHGAIHDAR 360 GGGADVLWGA ARVVCGYSSK GRLGPSEGGG GAESEIGEFG CLRR

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MGRSAWPKNL SASRKRAIQE LCGQNPKKLR DVFDAHSQTG DDPRQPVFAE DLIVSVLGSF  60
SNTQSLLSGT ESYEVFQVPS NAFVTSEVSE GSESIRSPVE SVKTPVQRSP VFILWKQSLV  120
KAATAIYEVR VAVALEILRR LSAMPKPMGY SKQKLMEYML SALKSRLSPV DNPPPVVELF  180
TKDHVLSVQS LYDISPCFKL GFMAANLAIA EAVLEQPSTN KLHVIDFDIG WEGQYLNLLH  240
ALSIRQAGNQ STLKFTTLAD SFNVAERMVG DRVSELAAKM GVRLVFNIVR QKLSELSRDS  300
LGCEADEVLV VNLAFKLYRM PDESVSAGRA PPVLEGAGAA GGDAGGAGDE REHGAIHDAR  360
GGGADVLWGA ARVVCGYSSK GRLGPSEGGG GAESEIGEFG CLRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	1e-13	115	350	86	350	Protein SHORT-ROOT
5b3h_B	8e-14	115	350	32	296	Protein SHORT-ROOT
5b3h_E	8e-14	115	350	32	296	Protein SHORT-ROOT
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018727334.1	1e-170	PREDICTED: scarecrow-like protein 8 isoform X2
TrEMBL	A0A059DD35	1e-120	A0A059DD35_EUCGR; Uncharacterized protein
STRING	XP_010043392.1	1e-176	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	2e-53	SCARECROW-like 8