PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008895.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 331aa    MW: 37789.4 Da    PI: 6.698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008895.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-18956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll++ v+++G g W+ ++r+ g++R++k+c++rw++yl
     EcC008895.10  9 KGAWTEEEDALLKEWVEKYGEGKWHQVPRRAGLNRCRKSCRLRWLNYL 56
                     79********************************************97 PP

2Myb_DNA-binding42.41.6e-1362107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E + +++++k+lG++ W++Ia ++  gRt++++k++w+++l
     EcC008895.10  62 RGAFQEDEVDMIIRLHKLLGNR-WSLIAGRLL-GRTANDVKNYWNTHL 107
                      8999******************.********9.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.982460IPR017930Myb domain
SuperFamilySSF466894.4E-286103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-22759IPR009057Homeodomain-like
SMARTSM007178.1E-16858IPR001005SANT/Myb domain
PfamPF002492.3E-16956IPR001005SANT/Myb domain
CDDcd001675.73E-111156No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2260111IPR009057Homeodomain-like
SMARTSM007171.8E-1261109IPR001005SANT/Myb domain
PROSITE profilePS5129417.8561111IPR017930Myb domain
PfamPF002492.7E-1262107IPR001005SANT/Myb domain
CDDcd001673.84E-867107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEGAIGVRKG AWTEEEDALL KEWVEKYGEG KWHQVPRRAG LNRCRKSCRL RWLNYLKPNI  60
KRGAFQEDEV DMIIRLHKLL GNRWSLIAGR LLGRTANDVK NYWNTHLVKK VIHHKPKEDD  120
PQRKFATKMN VIRPRPWNLS KSSAWLKGKA TLVASITPTG ENPGQKSPML SRRNKESAWW  180
EDLFTDNDPD KVLITSRSGS EGQRDAKLWP LKLAMEEGQN GWNELSVDAD NDPDKVVITS  240
RSSSEGQQDA QPWPQELAME EGQNGWTELS VDADNDPGKV VITSRSSSEG QQDAQPWPQE  300
LAMEEGQNGW NELSFNKEIW ELFGARPQAD I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2191117108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064837.10.0PREDICTED: transcription factor MYB90
SwissprotQ9FNV95e-58MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059BTP44e-98A0A059BTP4_EUCGR; Uncharacterized protein
STRINGXP_010064837.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-60myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]