PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC008895.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 37789.4 Da PI: 6.698 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 6.8e-18 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll++ v+++G g W+ ++r+ g++R++k+c++rw++yl EcC008895.10 9 KGAWTEEEDALLKEWVEKYGEGKWHQVPRRAGLNRCRKSCRLRWLNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.4 | 1.6e-13 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E + +++++k+lG++ W++Ia ++ gRt++++k++w+++l EcC008895.10 62 RGAFQEDEVDMIIRLHKLLGNR-WSLIAGRLL-GRTANDVKNYWNTHL 107 8999******************.********9.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.982 | 4 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.4E-28 | 6 | 103 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 7 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-16 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.73E-11 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-22 | 60 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 61 | 109 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.85 | 61 | 111 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-12 | 62 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.84E-8 | 67 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 331 aa Download sequence Send to blast |
MEGAIGVRKG AWTEEEDALL KEWVEKYGEG KWHQVPRRAG LNRCRKSCRL RWLNYLKPNI 60 KRGAFQEDEV DMIIRLHKLL GNRWSLIAGR LLGRTANDVK NYWNTHLVKK VIHHKPKEDD 120 PQRKFATKMN VIRPRPWNLS KSSAWLKGKA TLVASITPTG ENPGQKSPML SRRNKESAWW 180 EDLFTDNDPD KVLITSRSGS EGQRDAKLWP LKLAMEEGQN GWNELSVDAD NDPDKVVITS 240 RSSSEGQQDA QPWPQELAME EGQNGWTELS VDADNDPGKV VITSRSSSEG QQDAQPWPQE 300 LAMEEGQNGW NELSFNKEIW ELFGARPQAD I |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-21 | 9 | 111 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010064837.1 | 0.0 | PREDICTED: transcription factor MYB90 | ||||
Swissprot | Q9FNV9 | 5e-58 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A059BTP4 | 4e-98 | A0A059BTP4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010064837.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-60 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|