PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008367.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 450aa    MW: 49823.9 Da    PI: 7.7918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008367.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-1932121199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ffkv++ s  +   +l++p kfa +++g+   ++ ++led+ g++Wev+l  +k +g++ +++GW+ F +++gL++g f++F++ g s f  +v ++
  EcC008367.40  32 FFKVMIGSQFS--ELLYIPPKFAPTISGQ--LNQNIRLEDSGGKQWEVTL--SKVDGSFAFQRGWNAFSRDHGLEVGYFLLFYYLG-SHF--RVDIY 119
                   88999555555..569**********888..5668***************..********************************99.788..88888 PP

                   -S CS
            B3  98 rk 99 
                   ++
  EcC008367.40 120 DR 121
                   76 PP
2B336.77.5e-123724351885
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
            B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                   lp +f++  +  ++  k + l+d+s r+W v +    + g   lt+GW +F +ang++ gD +vF+l+
  EcC008367.40 372 LPSSFFKGSS--SRDRKVVFLTDPSKRTWPVLY--HERLGVRSLTSGWDGFRQANGIQRGDDCVFQLQ 435
                   6777775443..446678999************..88888888***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-2325124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2326124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0730122IPR003340B3 DNA binding domain
CDDcd100172.57E-2131120No hitNo description
SMARTSM010191.9E-1132122IPR003340B3 DNA binding domain
PfamPF023625.4E-1732121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-14351440IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0095354447IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111355450IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-13356435IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-10372450No hitNo description
PfamPF023622.8E-9372435IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGCKMEACAE CSRNCVIFHG KNKNASPNVS SFFKVMIGSQ FSELLYIPPK FAPTISGQLN  60
QNIRLEDSGG KQWEVTLSKV DGSFAFQRGW NAFSRDHGLE VGYFLLFYYL GSHFRVDIYD  120
RTGCRKVDFP ENWTSKKRSR SSRNSSDDPT GEKSSSESAS VVSGASAELD QCNRRTNVEE  180
AVKQMASVCL KSGGKSQPLS KMVFAEELSF MMDRHIENRE GEDVRPAFDL FDFEMKNNKT  240
CAGGNPYTVD GTGPSSVGAV LSQLCQDEAG LADKDPILDS VNNRTCEETD QNIKKLENSG  300
NLGGLDKQET LMNNCKRKKP IVKAEYTASD GQLAKGEAIN AKASSVHMAA NTSYSVKVVT  360
DCHSYLELPA DLPSSFFKGS SSRDRKVVFL TDPSKRTWPV LYHERLGVRS LTSGWDGFRQ  420
ANGIQRGDDC VFQLQILSNS QSLYKVSITR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037470.10.0PREDICTED: B3 domain-containing protein Os01g0905400
TrEMBLA0A059A5R60.0A0A059A5R6_EUCGR; Uncharacterized protein
STRINGXP_010037470.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1853758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-16B3 family protein