PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007872.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CPP
Protein Properties Length: 800aa    MW: 87850.4 Da    PI: 6.5782
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007872.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.96.5e-16476514240
           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    +k+CnCkkskClk+YCeCfaag++C e C C dC Nk 
  EcC007872.10 476 ACKRCNCKKSKCLKLYCECFAAGVYCIEPCACLDCLNKP 514
                   589**********************************96 PP
2TCR50.54e-16561600140
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  EcC007872.10 561 RHKRGCNCKKSGCLKKYCECYQGGVGCSFNCRCEGCKNSF 600
                   589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.8E-17475516IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.903476601IPR005172CRC domain
PfamPF036381.6E-11478513IPR005172CRC domain
SMARTSM011149.9E-17561602IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11563599IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0051015Molecular Functionactin filament binding
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MDTPEKTQIA APTVSAHEDS PVFNFIRSLS PIKPVKSTHI AQTFTSLPFT ALPSVFTSPH  60
ANFHKDPSFL RRHQSLDPSN PDCSSENHNI VCRNGDFING ISQRSKSSDK KVSVEVHAEP  120
CKEHSDFATE FPQTSRCGFY NPEGNMTTCS AGAEAAVETA GMSTPIIPVA MKSSGKPLPE  180
GEGQQQKEWP IDASDLFIFS SPNDVEAFRE LVHRSPDFGT ACLSSLMSRF TPDDVSGFER  240
SQQVDLPSRE QQQIEPPYPT DEAYGQKEAI KNLDYHNLDK FLDKYMSIQL DKNSHNDAGT  300
CVPFDYTPAP NFHRGLRRRC LDFEISELRK LSGDDSDYSH IALSQHDENT LVNDGQLPVE  360
SEGDPLRCTL PGIGLHLNAL ATTSNDYQSV EHGNLLSENQ LMNTQISSSS LNLPNSHQSL  420
HESLTSVASE DIGSADNGVL VVQDGSQSCA YPDSEELDHN SPQKKRRKAE HSEDTACKRC  480
NCKKSKCLKL YCECFAAGVY CIEPCACLDC LNKPIHEDTV LATRKQIESR NPLAFAPKVI  540
RASDSFPDTG DDSNKTPASA RHKRGCNCKK SGCLKKYCEC YQGGVGCSFN CRCEGCKNSF  600
GRKDGSTLNG VEAEIIDEGK ENIGKSVGNQ RSLEVAKQRD PIQATPSAYY GYHHVASLLL  660
INFHNDTKNT KWSSVCTRPS IQTTYSAKNE PPRSTSLVTT SSSSVLHAGQ NQGTHKHVAP  720
QPEFEKHYDD NNNNNNSNAG GKMPEVLRSN DTPNAVIKTA SPNGKRVSSP HSDFGSSPPL  780
RSGRRLILKS IPSFPSLTQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1848059814120Protein lin-54 homolog
5fd3_B5e-1848059814120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1463467KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024233.10.0PREDICTED: protein tesmin/TSO1-like CXC 3
TrEMBLA0A059B4560.0A0A059B456_EUCGR; Uncharacterized protein
STRINGXP_010024233.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-115TESMIN/TSO1-like CXC 2