PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC007544.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 139aa MW: 15754 Da PI: 9.4585 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.1 | 3.2e-13 | 2 | 79 | 18 | 100 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 +pkkf+ ++g++ s + le + + +W++ + ++s +++l kGW+eF + + g vvFk++g+s+f +v++f+ks EcC007544.20 2 IPKKFLGRYGKD--LSSLVLLEVLGSSTWSMGVEKLNNS-TVWLWKGWQEFMRHYSIGHGHLVVFKYKGNSTF--RVMIFDKS 79 9********977..777999999**********544444.599**************************9999..9***9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.253 | 1 | 79 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-17 | 2 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.03E-8 | 2 | 77 | No hit | No description |
Pfam | PF02362 | 2.0E-10 | 2 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-17 | 2 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
GIPKKFLGRY GKDLSSLVLL EVLGSSTWSM GVEKLNNSTV WLWKGWQEFM RHYSIGHGHL 60 VVFKYKGNST FRVMIFDKSA SEIDYSLSSI SNLGSGFILP KREDVIEVED SEDFAPCQKK 120 GSTRIHHVLS RVQAAHHQI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010065665.1 | 2e-65 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X5 | ||||
Refseq | XP_010065666.1 | 3e-66 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X6 | ||||
TrEMBL | A0A059BB47 | 3e-64 | A0A059BB47_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065661.1 | 3e-63 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-16 | B3 family protein |