PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007413.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 502aa    MW: 55578.9 Da    PI: 7.7133
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007413.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18288387198
                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                   f+k l+ sd++k grlvlpkk+ae++  +++++e+  l+++d +g +W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv
  EcC007413.10 288 FEKMLSASDAGKIGRLVLPKKCAEAYfpSISQPEGLPLKVQDAKGSEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGKLV 382
                   89**************************666677788***************9989999999***9.********************766.777777 PP

                   EEEE- CS
            B3  94 vkvfr 98 
                   +++++
  EcC007413.10 383 MGFRK 387
                   77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-30284391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.8E-19285387IPR015300DNA-binding pseudobarrel domain
CDDcd100173.99E-21286387No hitNo description
PROSITE profilePS5086310.983288389IPR003340B3 DNA binding domain
SMARTSM010191.4E-19288389IPR003340B3 DNA binding domain
PfamPF023627.6E-16288387IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
NFYEEGRFCE EFHQSASGWR DCELCGKKVH CGCIVSALAF ALLDPGGIEC MSCARKNLVL  60
TPPNPPWPTL LFPQPFSDRF KEPPVKNWNQ LAGSGPVPWR QATALFNTSI SRPDVLPRQP  120
HDASTSNDRF GVGERYSISS MDNFSNRFMN GNMKLGPVEK LENGFAGPNS DEHLNPCKIN  180
PQQSTYVKED PSTPPYGLAV PHASGNEPNG HIGLVGPHYR PAPPPAKHYL GSMLNDTNSS  240
GESHTRNGRP RGDARGRNQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGKI  300
GRLVLPKKCA EAYFPSISQP EGLPLKVQDA KGSEWIFQFR FWPNNNSRMY VLEGVTPCIQ  360
SMQLQAGDIV TFSRLEPEGK LVMGFRKAST APPSDQAELA DPSSWSKVDK SGYIAKEVLG  420
AKSALPRKRK SSTLGSKSKR LRIENEDVIE LKLTWEEAQG LLRPPPPPNH IPSVVVIEGF  480
EFEEYEDAPV LGKPTVFRTD TV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C4e-642663911126B3 domain-containing transcription repressor VAL1
5yzz_C4e-642663911126B3 domain-containing transcription repressor VAL1
5z00_C4e-642663911126B3 domain-containing transcription repressor VAL1
5z00_G4e-642663911126B3 domain-containing transcription repressor VAL1
5z00_K4e-642663911126B3 domain-containing transcription repressor VAL1
5z00_M4e-642663911126B3 domain-containing transcription repressor VAL1
6j9a_A4e-642663912127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887956.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G41e-145Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A218Y4340.0A0A218Y434_PUNGR; Uncharacterized protein
STRINGXP_010059360.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-117HSI2-like 1