PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC007135.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 703aa MW: 80466.4 Da PI: 6.5577 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 358.7 | 8.8e-110 | 332 | 701 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL++cA+av+s+d++ a+alL++++++asp gd +qRla+yf+++L+arla+++ ++y+ l ++t+ ++ l+a++l+ ++P+ + s+ + EcC007135.10 332 RTLLIQCAQAVASNDHRSANALLNEIRKHASPFGDGTQRLAHYFANGLEARLAGTGGQIYRGLVNRKTT---AADMLNAYHLYLAACPFQRYSNTVS 425 689************************************************************999999...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 +++ + v+ + r+HiiDf+i +G+ Wp+L+q L+ Rp + p+lRiTg++ p++g +++++etg+rLa++Ae+++vpfe+n+ +akr+e +elee EcC007135.10 426 CRMVIDTVADKMRIHIIDFGILYGFRWPTLIQLLSRRPCP-PKLRITGIDLPQPGfrPAQRIKETGRRLANYAESFNVPFEYNA-IAKRWEFIELEE 520 ***********************************99865.9************9*****************************.7*********** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 L+++++E+++Vn++++ ++l+de+v+ es+rd vL+l+++ +P+++++ + ++n++ F++rf eal+++s+lfd+l++ +p e++er+ +E++ l EcC007135.10 521 LKIDRDEVTIVNCMFRFENLFDETVAEESPRDIVLNLIRRAQPDLFIHGVINGNYNAPFFVTRFREALHHFSSLFDMLDTIIPCENQERMLIEKVTL 617 ************************************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +re+ n +aceg er+er e++++W+ r ++aGF +vpls + a+ + ++ + + + v+e ++l++gWk+r L+++S W+ EcC007135.10 618 EREALNTIACEGWERVERPESYKQWQLRNMRAGFVQVPLSRRLAQFVFNKIASRYHKDFVVDEVGKWLLIGWKGRFLYAFSTWK 701 *****************************************98887776666666566*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.431 | 305 | 681 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-107 | 332 | 701 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence Send to blast |
MMDPLMGALY PSDGFRPDDQ SISAVVDHCL VSRPTFQSAP DRCGEMHHLV DVAPFSNECR 60 DAPDTEETEF SDAVFEYISR ILMEEDIEEK TCMLQDSLDL LSAEKSFYEV LGKKYPPSPE 120 PSRTNCITYN DKDSNDSLLD GTRYTSTIGS RKTGYYANIG QVENPSNYGT MRFERDISPA 180 AFQPNQGGNA ERPDLCSESR FIRQFRMGVE ESSKFLPNQA TTELLYQEPH GKIDKVDRLG 240 ALKRKESLHM EEGNMEERSS KQAFVHEESV LRSDAFDAVL LNIQGEGLAH LMNLRASLKH 300 RVNEIAHKIE EPKGGRGHGE KKRGKVEVVD VRTLLIQCAQ AVASNDHRSA NALLNEIRKH 360 ASPFGDGTQR LAHYFANGLE ARLAGTGGQI YRGLVNRKTT AADMLNAYHL YLAACPFQRY 420 SNTVSCRMVI DTVADKMRIH IIDFGILYGF RWPTLIQLLS RRPCPPKLRI TGIDLPQPGF 480 RPAQRIKETG RRLANYAESF NVPFEYNAIA KRWEFIELEE LKIDRDEVTI VNCMFRFENL 540 FDETVAEESP RDIVLNLIRR AQPDLFIHGV INGNYNAPFF VTRFREALHH FSSLFDMLDT 600 IIPCENQERM LIEKVTLERE ALNTIACEGW ERVERPESYK QWQLRNMRAG FVQVPLSRRL 660 AQFVFNKIAS RYHKDFVVDE VGKWLLIGWK GRFLYAFSTW KPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-43 | 337 | 702 | 25 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010042112.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A059A778 | 0.0 | A0A059A778_EUCGR; Uncharacterized protein | ||||
STRING | XP_010042112.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |