PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC007034.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C2H2 | ||||||||
Protein Properties | Length: 1441aa MW: 159588 Da PI: 6.2579 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 1329 | 1354 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C C ++F+++ +L++H r+ + EcC007034.30 1329 HRCDmeGCRMRFKTRAELTVHKRNrC 1354 789999****************9877 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00039 | 1353 | 1376 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+Fs++ + + H+r+H EcC007034.30 1353 RCPveGCGKRFSSHKYAVLHQRVH 1376 69999*****************99 PP | |||||||
3 | zf-C2H2 | 11.5 | 0.00093 | 1412 | 1438 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H EcC007034.30 1412 YKCKveGCGLSFRFVSDFSRHRRKtgH 1438 99*********************9777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 1.1E-15 | 15 | 56 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 13.993 | 16 | 57 | IPR003349 | JmjN domain |
Pfam | PF02375 | 1.1E-15 | 17 | 50 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 3.57E-27 | 212 | 244 | No hit | No description |
SuperFamily | SSF51197 | 3.57E-27 | 292 | 462 | No hit | No description |
PROSITE profile | PS51184 | 34.124 | 295 | 464 | IPR003347 | JmjC domain |
SMART | SM00558 | 4.9E-48 | 295 | 464 | IPR003347 | JmjC domain |
Pfam | PF02373 | 2.5E-36 | 329 | 447 | IPR003347 | JmjC domain |
SMART | SM00355 | 11 | 1329 | 1351 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.092 | 1352 | 1381 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 1352 | 1376 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.86E-6 | 1352 | 1388 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 1353 | 1380 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1354 | 1376 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.8E-9 | 1381 | 1406 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.157 | 1382 | 1411 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 1382 | 1406 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1384 | 1406 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.23E-10 | 1392 | 1434 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-11 | 1407 | 1435 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 1412 | 1441 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 1412 | 1438 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1414 | 1438 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008080 | Molecular Function | N-acetyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1441 aa Download sequence Send to blast |
MGNVEIPDWL MGLPLAPTFR PTDTEFADPI AYISKIEKEA SAFGICKIVP PLPRPSKKYV 60 FGNLNRSLLK CPESGLGSGS GLGSGGGSQN ALRKPGSEDN GSDGETKAVF TTRQQELGQS 120 AKRTKGPGSN AHSGVQKQVW QSGETYTLEQ FEAKSRAFGR SQLGMVKEAS PEVIEALFWQ 180 AASEKPIYVE YANDVPGSGF GEQDGRFRYF HRRRRMKMDY HRHREGTDSK NNEVDNVQDS 240 HRSETKDLSR GDDSSGLETH KSSTSQSGLM TEETSRACRR SNSGSNELEG TAGWKLSNSP 300 WNLQVIARSS GSLTRFMPDD IPGVTSPMIY IGMLFSWFAW HVEDHELHSM NFLHMGSPKT 360 WYAVPGDYAF SFEEVLRKEA YGGNMDRLAV LSLLGEKTTL LSPEVIVAAG IPCCRLIQNP 420 GEFVVTFPRA YHIGFSHGFN CGEAANFATP QWLRFAKEAA VRRAAMNYLP MLSHQQLLYL 480 LTMSFVSRVP MSLIPGARSS RLKDRLREER ELSVKKAFLE DILNENDLLS SLLGKESTIH 540 AVIWNPHMLP SLSKGSQSPD GTAAISSSEK ENSHHHSGND SSINLFKEMT MFMEALNDSY 600 VDKDDLLFDF QVDSGTLPCV ACGILGFPFM SVIQPSETAS AALLPTKHDT QQTCEDRSDI 660 SDTASPLMQL QVPSSTDSEK GMGSSGGSRR PRIFCLEHAI QTEELLRSKG GANVLVICHS 720 DYQKMKAYAG AIAEEIDVSF KYKDIPFDPA SEEDLNLIDL AIDDQECTGY RDDDWTSKLG 780 INLRCCVKAR KNSPSNQVQH ALTLGGLFCD DSPSTIFNLK WKSRKSRSRT RLGTPEKCEP 840 CETLQRKDPE VSRNKLDSDA VRKEEIILQY TRRNAKFKSG SSTGTSRSHG CYDKQPVEVS 900 LASAGEVHLK SNNQTDNTYC GTESPVCETA DLPVGLGDVS HEIQVLEATT DLTLDLIPAQ 960 VASSLANVTT YVGNVEVQII NQASEEMNVK QQSVRSATYI SQRHSENEFS QNLGGQNEIL 1020 VSTDICFRTV KETEENLNIL KVTKTTEVSD SDVVNDSEVA AVPDARSPSS SLCAKLTSGC 1080 EVHEETALLE LKDGHNVNGN AVVCAEATRC GAPMGPHPHV CSGSDEQEDE IHRTVNQSVP 1140 LLIEARTEAP EATSSEEQGR SYGSAYCKSP EKDRTANATG DENPVICSVE IMDQQSAASD 1200 QGCSHVQRDS NDSNGETNDE DPPCQDDREP QTMESTEVDQ VSTTRRRRKR KSELETIAED 1260 QLNCSGFIRS PCEGLRSRAG KETTNGSDCI SSSGYENPAK KARESRKEVK PRKETVSFDD 1320 KKEKRGGSHR CDMEGCRMRF KTRAELTVHK RNRCPVEGCG KRFSSHKYAV LHQRVHEDDR 1380 PLKCPWKGCI MTFKWAWART EHIRVHTGER PYKCKVEGCG LSFRFVSDFS RHRRKTGHYV 1440 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 9e-55 | 271 | 478 | 138 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 9e-55 | 271 | 478 | 138 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1244 | 1250 | RRRRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067320.1 | 0.0 | PREDICTED: probable lysine-specific demethylase ELF6 | ||||
Swissprot | Q6BDA0 | 0.0 | ELF6_ARATH; Probable lysine-specific demethylase ELF6 | ||||
TrEMBL | A0A059BH79 | 0.0 | A0A059BH79_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067320.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11520 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |
Publications ? help Back to Top | |||
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