PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC006970.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 196aa MW: 22460.8 Da PI: 9.6418 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.3 | 2.3e-12 | 85 | 191 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 +k lt+sd + ++rl + ++f+++h + ++ ++ +++++d + + ++ + ++ +sg+yvl++GW keFvk gL +gD v ++ EcC006970.50 85 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmneetvrQVESSKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAVGDEVGIYW- 180 5889************************98888877444457788999996666778888888*************999***********999995. PP SS.SEE..EEEE CS B3 86 gr.sefelvvkv 96 + s ++++++ EcC006970.50 181 -EpSASKFHFSL 191 .44555457666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.35E-15 | 83 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0061 | 84 | 195 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.94E-18 | 84 | 192 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-15 | 85 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.9E-9 | 86 | 190 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
VVASREFFLL VPDQNTKEVG HPRQEIVPAQ LKRKSMASIA DPETFIVEKT KKYKRTQRGK 60 EEASGCDAEE VSTELTLLFD PYKIKKRLTQ SDLGHLSRLL IGRDFVKSHF LRWMNEETVR 120 QVESSKGADV IVRDMDTCSE HRLVFVFWAS SGSYVLKGGW IKEFVKRRGL AVGDEVGIYW 180 EPSASKFHFS LLHKAN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010041071.2 | 1e-126 | PREDICTED: uncharacterized protein LOC104429979 | ||||
TrEMBL | A0A059C5A2 | 1e-138 | A0A059C5A2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010041071.1 | 1e-137 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 2e-30 | B3 family protein |