PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006881.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 406aa    MW: 45077.9 Da    PI: 6.2974
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006881.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.63.5e-95364061364
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lLl+cA+  ss++l++a+a+L+r+ el+s +gdpmqRlaa f+ ALa r+++ ++++y+al + +++  +  ++  a+ ++  ++P+l f+  +
  EcC006881.20  36 LIQLLLSCARNASSNNLHRADACLQRILELSSMTGDPMQRLAAWFASALAVRIVKRWPGIYRALLSHAEQ--DGPTAPRARPILAPAFPCLAFTRAV 130
                   689***********************************************************99877776..5888889999*************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                     + +l+a++ge++vHi+D++ + +  W++Ll+ L++ p+gpp++R+T v++    +++ l  +g+ L k Ae +g+pf+fn+ v  +l +l+ e+L
  EcC006881.20 131 IARILLRALAGERAVHIVDLGSGDPELWVPLLRGLSQGPDGPPQFRLTCVSA----RRDVLDILGHALVKEAEIMGMPFQFNP-VNVSLRELTEEML 222
                   ****************************************************....9**************************.6889********* PP

          GRAS 195 rvkpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                   r+++gE++aV ++l lh ll              ++sv+ +++  e+L++v+s sP+v+ +veqeadhn++++++rf+e l+yysa+fds++a l+ 
  EcC006881.20 223 RLRSGETMAVVSMLGLHALLaeedridadfgmikSDSVKESKRVGEFLSMVQSASPRVFFLVEQEADHNATRLVDRFVEGLHYYSAVFDSIDAALGG 319
                   *********************************9999999999***************************************************988 PP

          GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                      eer  +E++ +grei+++v+ceg er++rhe++++W  rl  aGFkpv+l  +a+++ak   + +  dgy+v  e+++ +++W++
  EcC006881.20 320 SCpEERLALEEM-FGREIEDIVSCEGLEREKRHERYARWPVRLAWAGFKPVRLWLNAMEDAKGAAEAHLRDGYKVVTERACTMICWHE 406
                   888999999999.*************************************************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.37210396IPR005202Transcription factor GRAS
PfamPF035141.2E-9236406IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030244Biological Processcellulose biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016866Molecular Functionintramolecular transferase activity
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSSSSASAKP DVTLSLTLPS SPAHETFKPE ERGLLLIQLL LSCARNASSN NLHRADACLQ  60
RILELSSMTG DPMQRLAAWF ASALAVRIVK RWPGIYRALL SHAEQDGPTA PRARPILAPA  120
FPCLAFTRAV IARILLRALA GERAVHIVDL GSGDPELWVP LLRGLSQGPD GPPQFRLTCV  180
SARRDVLDIL GHALVKEAEI MGMPFQFNPV NVSLRELTEE MLRLRSGETM AVVSMLGLHA  240
LLAEEDRIDA DFGMIKSDSV KESKRVGEFL SMVQSASPRV FFLVEQEADH NATRLVDRFV  300
EGLHYYSAVF DSIDAALGGS CPEERLALEE MFGREIEDIV SCEGLEREKR HERYARWPVR  360
LAWAGFKPVR LWLNAMEDAK GAAEAHLRDG YKVVTERACT MICWHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-402840611369Protein SCARECROW
5b3h_A2e-402840610368Protein SCARECROW
5b3h_D2e-402840610368Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029404.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A059ASB90.0A0A059ASB9_EUCGR; Uncharacterized protein
STRINGXP_010029404.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2066156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-81scarecrow-like 3