PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006872.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 54aa    MW: 6503.39 Da    PI: 11.2028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006872.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-19752251
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51
                  +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++
  EcC006872.10  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAAR 52
                  6*******9.**********8.....334*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.78E-23654No hitNo description
PROSITE profilePS5103219.282754IPR001471AP2/ERF domain
SMARTSM003801.8E-22754IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-17753IPR016177DNA-binding domain
PfamPF008472.9E-12752IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-28754IPR001471AP2/ERF domain
PRINTSPR003677.0E-12819IPR001471AP2/ERF domain
PRINTSPR003677.0E-123046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MTRTQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLM
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022001099.11e-32ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW56e-32ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A251SSK33e-31A0A251SSK3_HELAN; Putative integrase-type DNA-binding superfamily protein
STRINGXP_010063547.19e-32(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.17e-23ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]