PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006529.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 444aa    MW: 50115.7 Da    PI: 9.8441
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006529.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS146.23.1e-452654162154
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL++cA+av+s+d++ a+alL++++++asp g+ +qRla+yf+++L+arla+++s++y+ l  ++t+    ++ l+a++l+  ++P+ + s  + 
  EcC006529.30 265 RTLLMQCAQAVASNDHRSANALLNEIRKHASPFGNGTQRLAHYFANGLEARLAGTGSQIYRGLVNRKTT---AADMLNAYQLYLAACPFQRYSDAVP 358
                   689************************************************************999999...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...s 154
                    + Il+ v+ e r+HiiDf+i +G+ Wp+L+q L++Rp++ p+lRiTg++ p+ +   +
  EcC006529.30 359 IRSILDTVADEMRIHIIDFSILYGFRWPTLIQRLSQRPRP-PNLRITGIDLPHLDsgpQ 416
                   *************************************976.9*******9987664443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.256238444IPR005202Transcription factor GRAS
PfamPF035141.1E-42265416IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
TEVSNAVFEY ISRILMEEDI EEKTCMLQDS SDPLSAEKSF YEVLGKKYPP SPETSRTNCI  60
TYNDKHSNES LLDSTRCTST IGSRKTGYYA NIGRVQNPSN YGTMSFEKDI SPAAFQPNRG  120
GNAQRLDLWD ESQFVRQFRM GIEESSKFLP NQAPTKLLPL KSNRKIDKRD RLGASERKDS  180
LHREEGNTEE RNSKQAFVHE ESVLRSDAFD VVLLSGQGEG LARLMNLRAS LKNGVNEIEH  240
KIQEPKAGRG HGKKKRGKVE VVDVRTLLMQ CAQAVASNDH RSANALLNEI RKHASPFGNG  300
TQRLAHYFAN GLEARLAGTG SQIYRGLVNR KTTAADMLNA YQLYLAACPF QRYSDAVPIR  360
SILDTVADEM RIHIIDFSIL YGFRWPTLIQ RLSQRPRPPN LRITGIDLPH LDSGPQKESR  420
KRVSAWQITL KVSTCRLSTT PLRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2227040625165Protein SCARECROW
5b3h_A2e-2227040624164Protein SCARECROW
5b3h_D2e-2227040624164Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721242.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_018721244.10.0PREDICTED: scarecrow-like protein 9
TrEMBLA0A059A8A90.0A0A059A8A9_EUCGR; Uncharacterized protein
STRINGXP_010037825.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.18e-77GRAS family protein