PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006368.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 116aa    MW: 12992.3 Da    PI: 4.4924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006368.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.12.2e-089372856
           AP2 28 rkrfslgkfgtaeeAakaaiaarkklege 56
                   +r +lg+f t eeAa+a++ a+ +++g+
  EcC006368.10  9 GARLWLGTFETVEEAARAYDWAAFAFRGH 37
                  389**********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-10150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-18145IPR001471AP2/ERF domain
PROSITE profilePS5103216.015144IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-13145IPR016177DNA-binding domain
CDDcd000189.14E-18145No hitNo description
PfamPF008472.6E-5937IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
EIQDPLRIGA RLWLGTFETV EEAARAYDWA AFAFRGHLAI LNFPNEQQYY AQNDHDVSGH  60
HSSFSTSLSL PSWPFSSAGS SSSTMSAPAE PSRDVIQFEY LDDKLLAELL KLHSDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-141462974Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045994.13e-45PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-26ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059D2K53e-35A0A059D2K5_EUCGR; Uncharacterized protein
STRINGXP_010045994.11e-44(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-14ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]