PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC006129.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 129aa MW: 13294.6 Da PI: 4.3141 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 46.4 | 6.5e-15 | 74 | 126 | 3 | 55 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 lLl+cAe+v+ ++l+ a+ lL ++s l+sp g++ +R+aayf+ AL+ar+++ EcC006129.20 74 GLLLQCAECVAMDNLADANDLLPEISVLSSPFGSSPERVAAYFAHALQARVVS 126 58*************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.705 | 46 | 129 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-12 | 74 | 126 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
KTKRPDRDRD LPGAGAGAGS PSSGDDRPSS SKRTHFSGGD DATVSGEKAA AEEAELEPQP 60 PADEGEGSGL RLLGLLLQCA ECVAMDNLAD ANDLLPEISV LSSPFGSSPE RVAAYFAHAL 120 QARVVSSFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-13 | 78 | 129 | 25 | 76 | Protein SCARECROW |
5b3h_A | 7e-13 | 78 | 129 | 24 | 75 | Protein SCARECROW |
5b3h_D | 7e-13 | 78 | 129 | 24 | 75 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044705.1 | 6e-53 | PREDICTED: scarecrow-like protein 23 | ||||
TrEMBL | A0A059DD90 | 1e-51 | A0A059DD90_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044705.1 | 2e-52 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 5e-18 | GRAS family protein |