PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC005481.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 159aa MW: 17915.1 Da PI: 10.1748 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.4 | 2.7e-23 | 5 | 70 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++l++edesg+ W+++++y+ +s++yvltkGW++Fvk+++L++gD+v+F++d+ + ++l+++++r+ EcC005481.10 5 QQLSFEDESGKWWRFRYSYWSSSQSYVLTKGWSRFVKDKRLDAGDVVLFHRDRADAERLFIGWRRR 70 5799**********************************************99889999******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.747 | 1 | 71 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0085 | 3 | 71 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-24 | 4 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.19E-20 | 4 | 72 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-20 | 4 | 70 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.17E-11 | 5 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
GEATQQLSFE DESGKWWRFR YSYWSSSQSY VLTKGWSRFV KDKRLDAGDV VLFHRDRADA 60 ERLFIGWRRR GESSPGASAV AAETRVGGGG GGFYAGRRPY PGNNDGPSQP GSYAHGQAGN 120 LDFFFFLYMI SLSLSLSLSL SLSIEIEKRK RIRQVFIIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-25 | 7 | 70 | 47 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-25 | 7 | 70 | 47 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059417.1 | 7e-60 | PREDICTED: B3 domain-containing protein At2g36080 | ||||
Swissprot | Q9FNI3 | 6e-35 | Y5625_ARATH; B3 domain-containing protein At5g06250 | ||||
TrEMBL | A0A059DJE9 | 2e-58 | A0A059DJE9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059417.1 | 3e-59 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06250.2 | 9e-28 | B3 family protein |