PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC005324.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 412aa MW: 44243.4 Da PI: 9.2435 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.1e-06 | 44 | 64 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a G+C++Gd+C F+H EcC005324.10 44 PCSNYASKGFCSRGDNCMFSH 64 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.502 | 1 | 11 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.713 | 14 | 41 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.095 | 16 | 40 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.06 | 42 | 66 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 44 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.516 | 44 | 67 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
GEKCKFSHDT VPLTKSTKPC CHYARNSCMK GDDCPFDHQL SKYPCSNYAS KGFCSRGDNC 60 MFSHKIEDST IASNTCNNES NHPAMPLILK KQPGTIVGSH ENNAHTAVDT SHATFKYLKP 120 SMIGSATNLP VLKPERGSSN SAEKSLLISF NKSEKGSSSA KDGSRIGIHT GENASGTVQN 180 VDPISKTTPL LPPKGVNFLS FGSSSKQTDT KKPANFFFNT SNVNILKHAT STQQKGDSNI 240 IVNDESHPMS MLPNSNEATE RIEPVVKPED LMRFSSRKAS LHDFTPGEQS GSSSVGNDAI 300 DRSLQGKPSA SSTTHSSSMT TWKLPVSPIT PGQPSDSMPR LYRNISSSAQ KALSSTLAFA 360 AMFETDTRSK HADGHRAVTG KAGEDSAHGF QNDSAKASKI LDLLANIGKK KQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010048162.1 | 0.0 | PREDICTED: uncharacterized protein LOC104437009 | ||||
TrEMBL | A0A059CPF5 | 0.0 | A0A059CPF5_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010048162.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12160 | 15 | 16 |