PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC005220.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HSF | ||||||||
Protein Properties | Length: 350aa MW: 39398.4 Da PI: 7.8667 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.1 | 3.8e-35 | 26 | 117 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sw +++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg+k+ll++i+ EcC005220.10 26 FLTKTYQLVDDPKTDYIVSWGDDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCEIH 113 9*****************************************************************99.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ks EcC005220.10 114 RRKS 117 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-37 | 18 | 110 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.5E-57 | 22 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.86E-33 | 23 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.4E-31 | 26 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-19 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 65 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.1E-19 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006629 | Biological Process | lipid metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MALLLENSCE GILLSLESQK SIPAPFLTKT YQLVDDPKTD YIVSWGDDET TFVVWRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FRKGEKHLLC EIHRRKSPQP 120 QQVPINHQYP PSPIGGCGSY FPFVGGRVNC IAPPESDELT WCESSPLINT PNVSVVDNFV 180 SYNNGPSSSS PSSVVAALAK DNERLRRSNE MLTSELAHMR KLYNDIIYFV QNHVKPVTPS 240 NSIISNQAFG NFPATNGHKK HVAQVGNNLA DSPTNTSQSS VTILDEEDAT NCSSSKMKLF 300 GVPLRSKKRL HPDKYAPSKI AETNNNKARL VLENDELRLN LMPPSTFASY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-21 | 22 | 115 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-21 | 22 | 115 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-21 | 22 | 115 | 26 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059922.1 | 0.0 | PREDICTED: heat stress transcription factor B-4 | ||||
Swissprot | Q9C635 | 1e-112 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A059BJL8 | 0.0 | A0A059BJL8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059922.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-111 | heat shock transcription factor B4 |