PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC005064.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 374aa MW: 41286 Da PI: 4.8533

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC005064.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.1e-33	176	230	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpe He+Fveav+qLGGs++AtPk +l+lm+v+gLt++hvkSHLQkYR+ EcC005064.40 176 KARMRWTPEHHEAFVEAVNQLGGSDRATPKGVLKLMNVEGLTIYHVKSHLQKYRT 230 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.82	173	233	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	174	232	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.79E-18	174	230	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-24	176	230	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-9	178	229	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-22	263	309	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
VTQMLFKNGT VGSGLSSASG CTSDICFSSP QQPERHAQYS PFISPASVIR TSTPPIGFPR 60 TEVQATALTD IPKESKDVLW DPNQLQDFLY SENVPSQNVQ LESRGAVVGC DNQSAGSDLI 120 WTENFGEAMD LDWSKFLADD DAIEPSKPPL AVQGQSLPPA ESSAAANQLS SAPSSKARMR 180 WTPEHHEAFV EAVNQLGGSD RATPKGVLKL MNVEGLTIYH VKSHLQKYRT ARYKPDSAES 240 EGSSEKKLSS LEDMKSLDLK ATMNITEALR MQMEVQKQLH EQLEIQRKLQ LRIEEQGRCL 300 QMLFEKQRNQ TEATEQPEAE KGLETTNPSS SPGESSLNMN KRQKVSEART TDDDNPDEGE 360 MGLPSPKRVR GHEP

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

VTQMLFKNGT VGSGLSSASG CTSDICFSSP QQPERHAQYS PFISPASVIR TSTPPIGFPR  60
TEVQATALTD IPKESKDVLW DPNQLQDFLY SENVPSQNVQ LESRGAVVGC DNQSAGSDLI  120
WTENFGEAMD LDWSKFLADD DAIEPSKPPL AVQGQSLPPA ESSAAANQLS SAPSSKARMR  180
WTPEHHEAFV EAVNQLGGSD RATPKGVLKL MNVEGLTIYH VKSHLQKYRT ARYKPDSAES  240
EGSSEKKLSS LEDMKSLDLK ATMNITEALR MQMEVQKQLH EQLEIQRKLQ LRIEEQGRCL  300
QMLFEKQRNQ TEATEQPEAE KGLETTNPSS SPGESSLNMN KRQKVSEART TDDDNPDEGE  360
MGLPSPKRVR GHEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-31	176	234	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-31	176	234	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-31	176	234	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-31	176	234	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-31	176	234	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-31	176	234	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-31	176	234	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-31	176	234	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043309.1	0.0	PREDICTED: myb family transcription factor PHL13
Swissprot	Q8GUN5	1e-71	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A059D520	0.0	A0A059D520_EUCGR; Uncharacterized protein
STRING	XP_010043308.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.3	9e-61	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]