PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004851.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 154aa    MW: 17292.7 Da    PI: 4.1438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004851.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.8e-091232447
                     HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                     W++Ia+ ++ gRt++++k++w++ 
     EcC004851.20  1 WSAIASQLP-GRTDNEVKNHWHTN 23
                     *********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-11131IPR009057Homeodomain-like
CDDcd001672.24E-6124No hitNo description
PfamPF002491.7E-6123IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-7131IPR009057Homeodomain-like
PROSITE profilePS5129416.677128IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
WSAIASQLPG RTDNEVKNHW HTNLKKRLNQ NTQPSSTTSP QEATITENHS WDHEAIPNNI  60
SDTSPNNILD LPTDGPMTAQ IVEGFASLHS SSSSRETSLS LCMETVDFSN TEYEASLDTY  120
IAESSGSFWT EPFITDNNIE SWLLLDERSH DVFY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051469.11e-108PREDICTED: myb-related protein Myb4 isoform X1
RefseqXP_018730914.11e-108PREDICTED: myb-related protein Myb4 isoform X3
RefseqXP_018730915.11e-108PREDICTED: myb-related protein Myb4 isoform X3
TrEMBLA0A059DGA21e-107A0A059DGA2_EUCGR; Uncharacterized protein
STRINGXP_010051469.11e-108(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.21e-11myb domain protein 15