PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC004248.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 151aa MW: 17256.9 Da PI: 5.0221 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++q+k++w+++l EcC004248.20 1 WSLIAGRVP-GRTDNQVKNHWNTHL 24 *********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.05E-6 | 1 | 24 | No hit | No description |
Pfam | PF00249 | 2.2E-7 | 1 | 24 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.88E-8 | 1 | 33 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-12 | 1 | 34 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.105 | 1 | 28 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0015976 | Biological Process | carbon utilization | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004089 | Molecular Function | carbonate dehydratase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
WSLIAGRVPG RTDNQVKNHW NTHLRKKLGT GNFKRPRSDP KPEYRAQEEQ ETADHHHPIN 60 DSNAGNCDRL PPCRSTMSNT SADDAEVGDV LMRENFLTGS EGSDGEEWMR DHRVWLGSPM 120 LSSDRYFELS SVGLEDLVID SYSLDQMWQQ L |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010044624.1 | 1e-105 | PREDICTED: transcription factor WER | ||||
TrEMBL | A0A059D8G8 | 1e-104 | A0A059D8G8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010044624.1 | 1e-104 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-13 | myb domain protein 66 |