PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004212.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 663aa    MW: 72202.5 Da    PI: 7.9426
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004212.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07256276526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C+ f++ G C+ Gd+C +aHg
  EcC004212.20 256 PCPEFRK-GSCQKGDSCEYAHG 276
                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.24E-1515138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.9E-1616163IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-857128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.59261141IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00646191IPR002110Ankyrin repeat
CDDcd002047.18E-1363160No hitNo description
PROSITE profilePS5008810.47296131IPR002110Ankyrin repeat
SMARTSM002480.02296128IPR002110Ankyrin repeat
PROSITE profilePS5010313.544251278IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5251277IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5256276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4256277IPR000571Zinc finger, CCCH-type
SMARTSM0035637286309IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869286310IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MEGESYFEKD EKHSNRSILL ELSASDDLPA FKTEVQENGC NIDGASFWYG RRIGSRKMGL  60
EERTPLMVAS LFGSSKVVKY ILESGKVDVN RACGSDKVTA LHCAVASGSA SAVEVVKLLL  120
HASADANCID GNGKKPIDVI ALPLKSRGDS RRKLMELLLK GDNSDGEFES HEEKPIAAPQ  180
ASKEGSEKKE YQFPVDISLP DINVGIYSTD EFRMYAFKVK PCSRAYSHDW TECPFVHPGE  240
NARRRDPRKY PYSCVPCPEF RKGSCQKGDS CEYAHGVFES WLHPAQYRTR LCKDETGCAR  300
KVCFFAHKPE ELRPVYASTG SAVPSPKSYS SSGLDMSTLS PLSLSSPSAS LPVTSTAPMS  360
PLAASSSPMS VNMWQSKANK LSPPMLQLPG SRLKTALSAR DLDLEMELRG LESQMATQQH  420
QLMEEISRLS SPSSCFSSRI GEVKPTNLDD VFGSPDPALL PQLQGLSRPS TPSQLQSPTG  480
LQMRQNSTQF RGAYQSNANA LSSPAMKQAP SYGFDSSSAV AAAVMNSRSA AFAKRSQSFI  540
DRGMASPGIA NSSPMMSSAM SSWSSPHGKL DWGVQGDELN KLRKAASFKM RSSTGAGANT  600
VSAAAMADEP DISWVNSLVK DVPSAEDAMF AAEKGQRTYG KDIRERITPW VEQLYREVPR  660
MAM
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067533.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A059BHU50.0A0A059BHU5_EUCGR; Uncharacterized protein
STRINGXP_010067533.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-173C3H family protein