PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004159.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 320aa    MW: 35491.6 Da    PI: 4.2283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004159.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.71.3e-112311717128
           NAM  17 eyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgra 113
                   +++   ++++ +++ +vi++v+ +++ P++Lp      e+ wyf  + ++         + ++ g+W   g+ +e++  +    g  +t  fykgr 
  EcC004159.10  23 KFMFCMARADFVPA-NVITDVNPFNCLPETLP------ENMWYFTNSVEN---------KGAEGGFWMPRGEPREIFG-DAFINGWEETHEFYKGRG 102
                   45555555555566.89**************9......456877555444.........45689**************.9999************** PP

           NAM 114 pkgektdWvmheyrl 128
                   p+ +ktdW m ey +
  EcC004159.10 103 PQVKKTDWSMLEYYM 117
                   *************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.3978140IPR003441NAC domain
SuperFamilySSF1019413.66E-1927140IPR003441NAC domain
PfamPF023652.8E-432116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MCPPAVAPLF DIKNISSNEE LFKFMFCMAR ADFVPANVIT DVNPFNCLPE TLPENMWYFT  60
NSVENKGAEG GFWMPRGEPR EIFGDAFING WEETHEFYKG RGPQVKKTDW SMLEYYMTSK  120
VSGEALSAKD AKSLCKVFCS SSSPLSNSKM LQNAAGTEFC RENYLYSLPP DNFNIPTEQC  180
ITNQMQVNTT SRNIMQRASS FSPSHPIESL PELDHIDSGD YLELLDLDIP QSSSPRSDNS  240
SCMTMSSDEI FDYLVAMLDS EAESGDHVEH RDAGCNLNVS DSSKPDDLVV QAAISGIFFG  300
LLASGFQWRG ATAGSISSDH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060912.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 1 isoform X1
TrEMBLA0A059BPZ70.0A0A059BPZ7_EUCGR; Uncharacterized protein
STRINGXP_010060912.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.19e-14NAC domain containing protein 57