PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC003884.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 27464.9 Da PI: 5.442 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.5 | 2.2e-39 | 7 | 137 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 GfrF Pt+eel+++yL++++eg+ +l ++i+ +diy +ePw+Lp+ +++++++w+fF++ ++++a+g r++r+t+ gyWkatg+ +v+s EcC003884.20 7 TGFRFFPTEEELISFYLHNQLEGSLqDQLRRIIPVLDIYATEPWNLPElsgeLCREDKEQWFFFAPMQEREARGGRPTRSTAVGYWKATGSPCHVYS 103 7*********************99834555669999**********9656654455777************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +g+kk+ vfy g+ap+g+kt+W ++eyr+ EcC003884.20 104 SENKIIGMKKSRVFYVGKAPTGRKTKWKLNEYRA 137 ********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-40 | 5 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.498 | 5 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-19 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MMEDHLTGFR FFPTEEELIS FYLHNQLEGS LQDQLRRIIP VLDIYATEPW NLPELSGELC 60 REDKEQWFFF APMQEREARG GRPTRSTAVG YWKATGSPCH VYSSENKIIG MKKSRVFYVG 120 KAPTGRKTKW KLNEYRAIEI ISAPPSNSSS SSMPMFRLRH GFTLCRVYVV SGSSRAFDRR 180 PLELVAGETI QGGDAGDGSS GESASPSRSM IENNAEISNY RETISMETEE PIWDWEPLNL 240 F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-31 | 8 | 175 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-31 | 8 | 175 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-31 | 8 | 175 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-31 | 8 | 175 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-31 | 8 | 175 | 23 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-31 | 8 | 175 | 23 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-31 | 8 | 175 | 23 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-31 | 8 | 175 | 23 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-31 | 8 | 175 | 23 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-31 | 8 | 175 | 23 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-31 | 8 | 175 | 23 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-31 | 8 | 175 | 23 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-31 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-31 | 8 | 175 | 20 | 170 | NAC domain-containing protein 19 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034224.1 | 1e-177 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-82 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059AB41 | 1e-175 | A0A059AB41_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034224.1 | 1e-177 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-81 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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