PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003791.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 467aa    MW: 52528.3 Da    PI: 6.16
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003791.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.71.6e-136504642374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++ L+ cA++v++g+  +a+ +L+++s++aspdgd+mqR+aayfteALa r+++ +++l kal++++ s+  +see+ + + f+e++P+lk++++++
  EcC003791.20  50 IRYLIGCANHVAAGSVDNANICLEQISHHASPDGDTMQRIAAYFTEALADRILKGWPGLHKALNSTKISP--VSEEILVKRWFFELCPFLKLAYVIT 144
                   688************************************************************9999985..************************* PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   NqaIlea++ge++vHiiD++  +++QW++Llq+L++Rpegpp+lRiTg+++    +ke l +++ rL++ Ae+l++pf+fn+ v+ +le+l+le+Lr
  EcC003791.20 145 NQAILEAMDGEKMVHIIDLNSFEPAQWVNLLQSLSARPEGPPHLRITGIHE----QKEVLDQMALRLNEEAEKLDIPFQFNP-VVCKLENLDLESLR 236
                   ***************************************************....9**************************.6888********** PP

          GRAS 196 vkpgEalaVnlvlqlhrll..................................................desvsleserdevLklvkslsPkvvvvv 242
                   vk+gEala+++vlqlh++l                                                  d+ + ++ +   +L  +++lsPk++v++
  EcC003791.20 237 VKTGEALAISSVLQLHTILaaddetqrrtspsasnssnsshqqralhmkqrtlgewlekdvvslycaspDSALVSSPKMGGFLTSLWGLSPKLMVIT 333
                   *******************************************************************97554444447999**************** PP

          GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                   eqe++hn ++++er +eal++y +lfd+le+++pr+s er+kvE++l+g+ei+n++aceg +r+erhe+lekW  rle aGF++v+ls++   qa +
  EcC003791.20 334 EQESNHN-GTLMERYVEALYFYGSLFDCLESTVPRASVERQKVEKMLFGEEIKNIIACEGIQRKERHEKLEKWILRLELAGFGKVSLSYNGLLQAGR 429
                   ******6.68*************************************************************************************** PP

          GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ll++++ dgy+++ee+g+l+l+W+drpL+svSaWr
  EcC003791.20 430 LLQNYGYDGYTLKEENGCLLLCWHDRPLFSVSAWR 464
                   **********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.23723444IPR005202Transcription factor GRAS
PfamPF035145.4E-13450464IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MTGMLHDEGS SPVTSSPLQM FSLMSLSPGI GSPYPLLREV SPEDRGLWLI RYLIGCANHV  60
AAGSVDNANI CLEQISHHAS PDGDTMQRIA AYFTEALADR ILKGWPGLHK ALNSTKISPV  120
SEEILVKRWF FELCPFLKLA YVITNQAILE AMDGEKMVHI IDLNSFEPAQ WVNLLQSLSA  180
RPEGPPHLRI TGIHEQKEVL DQMALRLNEE AEKLDIPFQF NPVVCKLENL DLESLRVKTG  240
EALAISSVLQ LHTILAADDE TQRRTSPSAS NSSNSSHQQR ALHMKQRTLG EWLEKDVVSL  300
YCASPDSALV SSPKMGGFLT SLWGLSPKLM VITEQESNHN GTLMERYVEA LYFYGSLFDC  360
LESTVPRASV ERQKVEKMLF GEEIKNIIAC EGIQRKERHE KLEKWILRLE LAGFGKVSLS  420
YNGLLQAGRL LQNYGYDGYT LKEENGCLLL CWHDRPLFSV SAWRFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-685646626381Protein SCARECROW
5b3h_A6e-685646625380Protein SCARECROW
5b3h_D6e-685646625380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018733387.10.0PREDICTED: scarecrow-like protein 3 isoform X2
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A059BJV90.0A0A059BJV9_EUCGR; Uncharacterized protein
STRINGXP_010067760.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]