PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC003621.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 150aa MW: 16918.7 Da PI: 8.4642 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 50 | 133 | 2 | 93 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k ++ps+v+ +l l+ +f+++ ++k+ + +tl de+g+++ + rk++ l++GWk+F a++L +gD vvF+l++ ++++ EcC003621.10 50 VKSMLPSHVSGGFWLGLSVQFCKSS-LPKNDG-VITLVDEDGEEFPTIYLARKTG----LSGGWKGFSVAHELTDGDAVVFQLIKP--TTMK 133 6899******************766.555444.8***************656665....***********************9973..3333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-18 | 41 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-21 | 42 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.18E-22 | 47 | 134 | No hit | No description |
SMART | SM01019 | 8.8E-18 | 49 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.56 | 49 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-13 | 50 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
ITKLFMKIDR IFKRRDPLNL VYASAEAREY ALEKAEQLQS TLEPQYPTLV KSMLPSHVSG 60 GFWLGLSVQF CKSSLPKNDG VITLVDEDGE EFPTIYLARK TGLSGGWKGF SVAHELTDGD 120 AVVFQLIKPT TMKVVMMRLH MRLEIHFLAS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061766.1 | 3e-90 | PREDICTED: B3 domain-containing protein At5g42700 isoform X2 | ||||
Swissprot | Q9FMZ4 | 6e-52 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A059BSX9 | 7e-89 | A0A059BSX9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061764.1 | 4e-87 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-54 | B3 family protein |
Publications ? help Back to Top | |||
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