PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC003387.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 139aa MW: 16075 Da PI: 4.6629 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 55.8 | 1.4e-17 | 14 | 72 | 42 | 100 |
DUF260 42 vlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + ++lpe++r+da++s++yeA r+rdPvyG++g i++lq q++ql+a+la+ ++e EcC003387.10 14 TFRNFQTLPESQRDDAVTSMIYEASTRIRDPVYGCAGAISRLQMQISQLHAQLAKSQAE 72 56678999**********************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.261 | 1 | 73 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-15 | 17 | 70 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
HYLYEEQLID EGTTFRNFQT LPESQRDDAV TSMIYEASTR IRDPVYGCAG AISRLQMQIS 60 QLHAQLAKSQ AELISMQIQR ANLTEQLHMT KSQESLPQQS VKGLLNNPYD YQINSCLDDY 120 NGFGSFWEPL WTWLMGRAY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056894.1 | 8e-75 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 5e-29 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2C9W1E6 | 2e-39 | A0A2C9W1E6_MANES; Uncharacterized protein | ||||
STRING | XP_010056894.1 | 3e-74 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-31 | LOB domain-containing protein 1 |