PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC003298.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 166aa MW: 18989.1 Da PI: 10.4093 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.7 | 2.2e-27 | 32 | 86 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt+ LH++F+e+v++LGG+e A Pk il+lm+v+gLt+ h+kSHLQk R+ EcC003298.20 32 KRRIRWTQHLHNQFLECVNRLGGAETAKPKLILKLMDVEGLTIFHIKSHLQKCRI 86 68**************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.529 | 29 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-15 | 29 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 30 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-20 | 32 | 87 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-6 | 36 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-12 | 122 | 161 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 166 aa Download sequence Send to blast |
LEKGPPVSRN EAKPDADPGG NSNSLAAATS SKRRIRWTQH LHNQFLECVN RLGGAETAKP 60 KLILKLMDVE GLTIFHIKSH LQKCRIAKCI AESREGKISA FTMMSPNEYS LGKLIAEDFC 120 KTLLMQLNVQ KRLLHQLEMQ RSLQMKIEEQ GRQLKRYLEQ RLHNKN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-20 | 31 | 88 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-20 | 31 | 88 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-20 | 32 | 88 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-20 | 32 | 88 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-20 | 32 | 88 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-20 | 32 | 88 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-20 | 31 | 88 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-20 | 31 | 88 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-20 | 31 | 88 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-20 | 31 | 88 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-20 | 31 | 88 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-20 | 31 | 88 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021282747.1 | 6e-44 | myb family transcription factor PHL5 isoform X2 | ||||
Swissprot | Q0WVU3 | 4e-41 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A2R6QRS2 | 3e-44 | A0A2R6QRS2_ACTCH; Myb family transcription factor | ||||
STRING | EOY09469 | 4e-43 | (Theobroma cacao) | ||||
STRING | XP_009765655.1 | 2e-43 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 2e-43 | G2-like family protein |