PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002228.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 312aa    MW: 35597.7 Da    PI: 8.0271
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002228.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.7e-17321242100
                   EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   fk+   s +l+sg l +pk+f++++g++   s  + l+ + g +W vkl  +k++++ ++l kGW++F +   +  g  +vFk++g+s f  +v +f
  EcC002228.30  32 FKIV-LSRALESGKLGIPKSFLRRYGKD--LSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWRGFMEHYSIGHGHLLVFKYEGDSVF--HVIIF 121
                   4443.488899999***********977..7779***************..8887777****************************9999..**999 PP

                   -SS CS
            B3  98 rks 100
                   +ks
  EcC002228.30 122 DKS 124
                   985 PP
2B359.27e-19198302198
                   EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS............-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg............rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                   ffkv +++ + +++ l++p++f+ +h +++k+     tl+                rsW+vkl  r +  +  l++GW++F+++n+L +gD +vF+l
  EcC002228.30 198 FFKVVIQPTYVRKS-LTIPREFFIKHvQKNKQ---IATLRXXXXxxxqiatlrysdRSWQVKL--RTHEHTACLSTGWSSFARENDLLVGDCCVFEL 288
                   89999999999998.***********733333...233333322334555555555*******..999999************************** PP

                   -SSSEE..EEEEE- CS
            B3  85 dgrsefelvvkvfr 98 
                   ++r++  ++v++f 
  EcC002228.30 289 IDRDDIVFRVSIFH 302
                   *9998888888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-2525124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-2426124IPR015300DNA-binding pseudobarrel domain
CDDcd100172.90E-1929122No hitNo description
PROSITE profilePS5086313.6230124IPR003340B3 DNA binding domain
SMARTSM010191.1E-1531124IPR003340B3 DNA binding domain
PfamPF023622.7E-1432123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-24190305IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-21192304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.112197304IPR003340B3 DNA binding domain
CDDcd100172.63E-15197301No hitNo description
SMARTSM010198.5E-16198304IPR003340B3 DNA binding domain
PfamPF023626.0E-16198302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRRSRHRRR REGGGAEPEM DPGSPPSSPH FFKIVLSRAL ESGKLGIPKS FLRRYGKDLS  60
GLVLLKVPGG STWPVKLEKS DDGKVWLWKG WRGFMEHYSI GHGHLLVFKY EGDSVFHVII  120
FDKSASEIDY PSSIESDMSS PEEEFLSRKE EDVVEIKDSE GSVPCSQPSS DRLSREYGVP  180
SLLAALELAS EFKSDHPFFK VVIQPTYVRK SLTIPREFFI KHVQKNKQIA TLRXXXXXXX  240
QIATLRYSDR SWQVKLRTHE HTACLSTGWS SFARENDLLV GDCCVFELID RDDIVFRVSI  300
FHSDGKNLIY VD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211RRSRHRRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052027.10.0PREDICTED: B3 domain-containing transcription factor VRN1
TrEMBLA0A059CD820.0A0A059CD82_EUCGR; Uncharacterized protein
STRINGXP_010052027.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-24B3 family protein