PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC002228.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 20132.8 Da PI: 5.9469 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5.1e-15 | 11 | 88 | 18 | 100 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 +pk+f++++g++ s + l+ + g +W vkl +k++++ ++l kGW++F + + g +vFk++g+s f +v +f+ks EcC002228.10 11 IPKSFLRRYGKD--FSGLVLLKVPGGSTWPVKL--EKSDDGkVWLWKGWRGFMEHYSIGHGHLLVFKYEGDSVF--HVIIFDKS 88 9********977..77799**************..8887777****************************9999..**999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.098 | 1 | 88 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-6 | 3 | 88 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.97E-15 | 3 | 86 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-20 | 8 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-20 | 10 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-12 | 10 | 87 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MLVWRFGFSG IPKSFLRRYG KDFSGLVLLK VPGGSTWPVK LEKSDDGKVW LWKGWRGFME 60 HYSIGHGHLL VFKYEGDSVF HVIIFDKSAS EIDYPSSIES DMSSPEEEFI SRKEEDVMEI 120 EDSEGSMPCS QPSSYRSSRE YGVPSHLAAF ELASEFKSDH PFFKVVVQPS YVRKSL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010052028.1 | 1e-114 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Refseq | XP_010052029.1 | 1e-114 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 | ||||
Refseq | XP_010052031.1 | 1e-114 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3 | ||||
TrEMBL | A0A059CD82 | 1e-111 | A0A059CD82_EUCGR; Uncharacterized protein | ||||
STRING | XP_010052028.1 | 1e-113 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-21 | B3 family protein |