PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC001966.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 746aa MW: 82568.5 Da PI: 6.3494 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 384.1 | 1.7e-117 | 365 | 735 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 l++lL+ cA+ v+ +d + a+++L+++++++sp+gd mqR+a+yf+++L+arla+s++++y + +++ts +++l+a++l ++P+ k+s++ EcC001966.20 365 LRTLLTLCAQSVAVDDRRSANEMLKQIRQHSSPSGDGMQRMAHYFANGLEARLAGSGTQIYTGMMSKPTS---AASVLKAYRLMLAACPFKKISNFF 458 5789************************************************************999999...999********************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++I++ +e+++r+HiiDf+i +G+ Wp+L++ L+sRp+gpp++RiTg++ p++g +e++eetg+rL+++A+++gvpfefn+ +a+r+++++le EcC001966.20 459 SNKTIMNVAENATRLHIIDFGILYGFPWPCLIKRLSSRPGGPPKIRITGIDFPQPGfkPAERVEETGRRLKNYAKTFGVPFEFNA-IAQRWDTIQLE 554 *******************************************************999***************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +Lr++++E+l+Vn++++l++llde+v +es+rd v++l ++++P v+++ + ++++ F rf eal ++s++fd+l++++pr+ er+ +E+el EcC001966.20 555 DLRIDKDEVLVVNCMHRLKNLLDETVVTESPRDIVVNLTRKMNPAVFILGVTNGAYSAPFFTSRFREALFHFSTIFDMLDTNVPRDIPERMLIEKEL 651 ************************************************************************************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +g+e++nv+aceg+er+er et+++W+ r+++ GF+p+pl+e+++++ak ++ ++ + + v+e+ ++l+lgWk+r + ++S W EcC001966.20 652 FGWEAMNVIACEGSERIERPETYKQWQVRITRGGFTPLPLNEEIMETAKDRVKSYYHKDFVVDEDGQWLLLGWKGRIVDAFSTW 735 ********************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.027 | 339 | 716 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-115 | 365 | 735 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0009664 | Biological Process | plant-type cell wall organization | ||||
GO:0031047 | Biological Process | gene silencing by RNA | ||||
GO:0005576 | Cellular Component | extracellular region | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MDGRVGGDVY GRANGRAGGD AAAAVLLDYN LVNRLKIDEG DDERNSVGGA VPLSSDLNLA 60 GVAPPLSTVG SEKELAEECD FSDVVLKYIS EILMEEDVEE KTCMFQESAA LQAAEESFYE 120 VIGKRYPPSL NNHPISRAEM NHDTPADLSA IDSGDQRNLG GYNLVKPGWS CDMGGPRASV 180 SSSVSSSHTS VSSPYSSNSP IMDGFADSPV SILRLPELLS EKESAFHFKK GIEEASKFLP 240 DNSSLFADLE KSSLSLKIPE NDAINTVPKV EKTMGSGRLN KSRGKKNPHS EDVCLEESRS 300 HKHSSLSTES AVSSDMFDAV LLSCGKDDPL RAELQSVQQN GQTKGSNGKK SRVKKQGRKK 360 DMVDLRTLLT LCAQSVAVDD RRSANEMLKQ IRQHSSPSGD GMQRMAHYFA NGLEARLAGS 420 GTQIYTGMMS KPTSAASVLK AYRLMLAACP FKKISNFFSN KTIMNVAENA TRLHIIDFGI 480 LYGFPWPCLI KRLSSRPGGP PKIRITGIDF PQPGFKPAER VEETGRRLKN YAKTFGVPFE 540 FNAIAQRWDT IQLEDLRIDK DEVLVVNCMH RLKNLLDETV VTESPRDIVV NLTRKMNPAV 600 FILGVTNGAY SAPFFTSRFR EALFHFSTIF DMLDTNVPRD IPERMLIEKE LFGWEAMNVI 660 ACEGSERIER PETYKQWQVR ITRGGFTPLP LNEEIMETAK DRVKSYYHKD FVVDEDGQWL 720 LLGWKGRIVD AFSTWGPSTS TYSPKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-53 | 365 | 735 | 5 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067413.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
TrEMBL | A0A059BH42 | 0.0 | A0A059BH42_EUCGR; Uncharacterized protein | ||||
STRING | XP_010067413.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |