PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001966.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 746aa    MW: 82568.5 Da    PI: 6.3494
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001966.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.11.7e-1173657351373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+ v+ +d + a+++L+++++++sp+gd mqR+a+yf+++L+arla+s++++y  + +++ts    +++l+a++l   ++P+ k+s++ 
  EcC001966.20 365 LRTLLTLCAQSVAVDDRRSANEMLKQIRQHSSPSGDGMQRMAHYFANGLEARLAGSGTQIYTGMMSKPTS---AASVLKAYRLMLAACPFKKISNFF 458
                   5789************************************************************999999...999********************* PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    N++I++ +e+++r+HiiDf+i +G+ Wp+L++ L+sRp+gpp++RiTg++ p++g   +e++eetg+rL+++A+++gvpfefn+ +a+r+++++le
  EcC001966.20 459 SNKTIMNVAENATRLHIIDFGILYGFPWPCLIKRLSSRPGGPPKIRITGIDFPQPGfkPAERVEETGRRLKNYAKTFGVPFEFNA-IAQRWDTIQLE 554
                   *******************************************************999***************************.7********** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +Lr++++E+l+Vn++++l++llde+v +es+rd v++l ++++P v+++   +  ++++ F  rf eal ++s++fd+l++++pr+  er+ +E+el
  EcC001966.20 555 DLRIDKDEVLVVNCMHRLKNLLDETVVTESPRDIVVNLTRKMNPAVFILGVTNGAYSAPFFTSRFREALFHFSTIFDMLDTNVPRDIPERMLIEKEL 651
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                   +g+e++nv+aceg+er+er et+++W+ r+++ GF+p+pl+e+++++ak  ++ ++ + + v+e+ ++l+lgWk+r + ++S W
  EcC001966.20 652 FGWEAMNVIACEGSERIERPETYKQWQVRITRGGFTPLPLNEEIMETAKDRVKSYYHKDFVVDEDGQWLLLGWKGRIVDAFSTW 735
                   ********************************************************888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.027339716IPR005202Transcription factor GRAS
PfamPF035145.9E-115365735IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0009664Biological Processplant-type cell wall organization
GO:0031047Biological Processgene silencing by RNA
GO:0005576Cellular Componentextracellular region
GO:0003676Molecular Functionnucleic acid binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MDGRVGGDVY GRANGRAGGD AAAAVLLDYN LVNRLKIDEG DDERNSVGGA VPLSSDLNLA  60
GVAPPLSTVG SEKELAEECD FSDVVLKYIS EILMEEDVEE KTCMFQESAA LQAAEESFYE  120
VIGKRYPPSL NNHPISRAEM NHDTPADLSA IDSGDQRNLG GYNLVKPGWS CDMGGPRASV  180
SSSVSSSHTS VSSPYSSNSP IMDGFADSPV SILRLPELLS EKESAFHFKK GIEEASKFLP  240
DNSSLFADLE KSSLSLKIPE NDAINTVPKV EKTMGSGRLN KSRGKKNPHS EDVCLEESRS  300
HKHSSLSTES AVSSDMFDAV LLSCGKDDPL RAELQSVQQN GQTKGSNGKK SRVKKQGRKK  360
DMVDLRTLLT LCAQSVAVDD RRSANEMLKQ IRQHSSPSGD GMQRMAHYFA NGLEARLAGS  420
GTQIYTGMMS KPTSAASVLK AYRLMLAACP FKKISNFFSN KTIMNVAENA TRLHIIDFGI  480
LYGFPWPCLI KRLSSRPGGP PKIRITGIDF PQPGFKPAER VEETGRRLKN YAKTFGVPFE  540
FNAIAQRWDT IQLEDLRIDK DEVLVVNCMH RLKNLLDETV VTESPRDIVV NLTRKMNPAV  600
FILGVTNGAY SAPFFTSRFR EALFHFSTIF DMLDTNVPRD IPERMLIEKE LFGWEAMNVI  660
ACEGSERIER PETYKQWQVR ITRGGFTPLP LNEEIMETAK DRVKSYYHKD FVVDEDGQWL  720
LLGWKGRIVD AFSTWGPSTS TYSPKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-533657355374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067413.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A059BH420.0A0A059BH42_EUCGR; Uncharacterized protein
STRINGXP_010067413.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein