PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC001939.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 29325.8 Da PI: 4.8783 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 2 | 34 | 16 | 48 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +k +G g W+ I++ g++R++k+c+ rw++yl EcC001939.10 2 IKVHGEGKWRNIPKIAGLKRCGKSCRMRWLNYL 34 789****************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5e-16 | 40 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ EcC001939.10 40 RGNITSDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 84 7999******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.57E-4 | 1 | 34 | No hit | No description |
SMART | SM00717 | 16 | 1 | 36 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.217 | 1 | 34 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 1 | 41 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.95E-22 | 2 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-6 | 2 | 34 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.672 | 35 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-15 | 39 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 40 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 42 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.31E-10 | 44 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
YIKVHGEGKW RNIPKIAGLK RCGKSCRMRW LNYLRPDIKR GNITSDEEDL ILRLHKLLGN 60 RWSLIAGRLP GRTDNEIKNY WNSNLAKREQ GGKKPNPSKT ENIKPIATSE VKQDETQNPE 120 LVGDSALRNK DIVTLANSET AKSGQSSEYE SSDVSLPASM SREEPNLEQL MLDCTVGESD 180 LLEILDGSDF RFNKFEDISQ VMNSVENEAM SKNNNVGAAS PGQAHNLSSE GLEMDDWIAD 240 LAEMSSGFGS FSSILHGPED WIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-20 | 2 | 88 | 22 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047391.1 | 0.0 | PREDICTED: transcription factor WER | ||||
TrEMBL | A0A059CMZ8 | 1e-157 | A0A059CMZ8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010047391.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-49 | MYB family protein |