PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcC001631.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14585.6 Da PI: 9.123 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 4.1e-13 | 14 | 121 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 +k lt+sd + ++rl + ++f+++h + ++ ++ +++++d++ + ++ + ++ +sg+yvl++GW keFvk gL +gD v ++ EcC001631.10 14 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmseetvrQVESGRGADVIVRDLDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAAGDEVGIYW- 109 5889************************99888887555568999*****8887777788888*************999************99995. PP SS.SEE..EEEEE CS B3 86 gr.sefelvvkvf 97 + s e++++++ EcC001631.10 110 -EpSASEFHFSLL 121 .445555577665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.08E-16 | 12 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0034 | 13 | 124 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.39E-17 | 13 | 121 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-16 | 14 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.1E-10 | 15 | 119 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 127 aa Download sequence Send to blast |
STELTLLFDP YKIKKRLTQS DLGHLSRLLI GRDFVKSHFL RWMSEETVRQ VESGRGADVI 60 VRDLDTCSEH RLVFVFWASS GSYVLKGGWI KEFVKRRGLA AGDEVGIYWE PSASEFHFSL 120 LHRANQA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010042934.1 | 5e-89 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
Refseq | XP_018729963.1 | 1e-89 | PREDICTED: B3 domain-containing protein At2g33720-like | ||||
TrEMBL | A0A059C5A7 | 3e-88 | A0A059C5A7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010042934.1 | 2e-88 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33720.1 | 3e-29 | B3 family protein |