PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001384.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 282aa    MW: 31938.8 Da    PI: 7.405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001384.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06117926
                  GGGTS--TTTTT-SS-SS CS
       zf-CCCH  9 fartGtCkyGdrCkFaHg 26
                  f++ G C++G++C+F+H+
  EcC001384.50  1 FLK-GSCNRGSNCSFSHS 17
                  667.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035630118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.183117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2021947IPR000571Zinc finger, CCCH-type
SMARTSM003560.00372046IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0012445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-62548IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
FLKGSCNRGS NCSFSHSFQA KKPACKFFTS LKGCRNGDSC FFSHDLGTPF SSVTKPSSCI  60
PENGDADPAL LIRLFPFADE GNILILDDTN FHFTSNIARS YDPLRMVATT RLIESSISHP  120
SLTDVKIMWG LHHPYQTIIG KSVESRVLWK SVKCVLWFPD FEICGYGKNL EGQRSFMKNF  180
FEYLAIRLLA DALCEMPVIL TMNNLRFSNL QVEKLGRSCF FFLTESFPFA EQSFGELAHV  240
IPTQKLMEVS KPISYVFRMY PPADIESDDF QAAIKKCLHD VQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038212.10.0PREDICTED: DExH-box ATP-dependent RNA helicase DExH8
TrEMBLA0A059A8900.0A0A059A890_EUCGR; Uncharacterized protein
STRINGXP_010038212.10.0(Eucalyptus grandis)