PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001354.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 296aa    MW: 34245.8 Da    PI: 10.4584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001354.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.4e-153791799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                   +p kfa+ +   +e +  ++l+ +sg +W+ kl  rk   + ++ +GW+eF  +n L  ++f++F++dg+++f   v +f+ 
  EcC001354.10  3 KIPPKFARLFF--EELPHRVILKGSSGGKWNAKL--RKDNAGLYIHDGWREFHVDNSLGNKEFLLFEYDGKRSF--EVDIFDP 79
                  5999***8885..346778***************..999999**************************998888..9999885 PP
2B369.25.7e-222082901199
                   HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    k ++l++p+ fa++h  ++     +++l++++g++W+v +    +++r+++++GW  F ++n+L +gD++vF+l++++ef   v++fr+
  EcC001354.10 208 EKAKMLYIPRAFAQAHcPLE---RADIVLRNLEGNTWNVVC--VINKNRHFFSGGWLAFIQDNKLGTGDICVFELISSKEF--QVTIFRS 290
                   56688***********6444...458***************..788888**************************998888..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.6E-9180IPR003340B3 DNA binding domain
PROSITE profilePS5086314.353180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-19380IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-13378IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-17380IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-14478No hitNo description
Gene3DG3DSA:2.40.330.103.1E-27190290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-27191290IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-21196289No hitNo description
PROSITE profilePS5086316.003198291IPR003340B3 DNA binding domain
SMARTSM010194.6E-19201291IPR003340B3 DNA binding domain
PfamPF023621.8E-20203290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQKIPPKFAR LFFEELPHRV ILKGSSGGKW NAKLRKDNAG LYIHDGWREF HVDNSLGNKE  60
FLLFEYDGKR SFEVDIFDPT GLVRIDVPVT EGTETNLHNG KRPRGRPRKC PVVSQKTYLK  120
SQDKQNLKEE MDLRAIITSL EPRKRKQKKK LGKLTGGFPV SRSRFRCCSI EKKASSSEVN  180
ARLRAVEEKM FTSKFPYFMT YMKMFSLEKA KMLYIPRAFA QAHCPLERAD IVLRNLEGNT  240
WNVVCVINKN RHFFSGGWLA FIQDNKLGTG DICVFELISS KEFQVTIFRS AKTLHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108KRPRGRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028531.10.0PREDICTED: B3 domain-containing protein Os01g0723500
RefseqXP_018717742.10.0PREDICTED: B3 domain-containing protein Os01g0723500
RefseqXP_018717743.10.0PREDICTED: B3 domain-containing protein Os01g0723500
TrEMBLA0A059AND70.0A0A059AND7_EUCGR; Uncharacterized protein
STRINGXP_010028531.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2065625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-15related to vernalization1 1