PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC001305.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 747aa MW: 84336.9 Da PI: 6.1928

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC001305.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	348.3	1.2e-106	371	744	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL+ cA+a+s++d++ a++lL++++e++sp gd+ qRla+yf+++L+arl++ ++ y+++ +++ts ++ l++++l ++P+ +fs EcC001305.30 371 LRTLLILCAQAISNSDFRTANELLKQIRENSSPFGDASQRLAHYFANGLEARLMGnnvRGEVFYSTVVARRTS---AADILKSYHLHISTCPFNQFS 464 5789***********************************************99433344566666666666...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 + aN +Il+ +e+++++HiiDf+i G+QWp+L+q+L+sRp+gp +lRiTg++ p++g +e++eetg rL+k++e+++vpfefn+++++++e + EcC001305.30 465 MFFANYMILKFAEKATTLHIIDFGIAFGFQWPNLIQKLSSRPGGPCKLRITGIELPQAGlrPAERIEETGCRLKKYCERFDVPFEFNFIASRNWEFI 561 ******************************************************9*************************9999* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +l +L+++++E++aVn+ + ++l d++v+ +++rd+vL l++++ P+++v++ + ++n++ F +rf eal +sa++d l+a++ ++++er ++E EcC001305.30 562 KLADLKIQSNETVAVNCLDRFKNL-DDTVEDNNPRDTVLYLIRKIIPDIFVHAVRSGSYNAAFFETRFREALFEFSAVYDLLDATIDHNNKERLVIE 657 *************9988777.7******************************************************************* PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 re+ grei+nv+aceg++r+e+ et+++W+ r +aGFk++pl+++ +k + ++ + + + ++e+ ++++++W++r + S+W EcC001305.30 658 REFHGREIMNVIACEGSRRIEKPETYKQWQVRHVRAGFKALPLDQDFMKLFRGKMKAWYHKDFVLDEDGNWMLQCWRGRISFGSSCW 744 *******************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.375	345	725	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-104	371	744	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MISCLANDFL LDDPFLDLKS SDIAFVSKKV VKPVDLDNGD LILPSTIMSL DGGSFGPSRS 60 LRKGQSPERD SLPPSGDSDS LDPVLKYITQ MLMEENMEEQ PWVFADQVAL QNTEKSLYDA 120 LVQQNLQQSD QSSSQVDLSQ YIEGPNSNLS GSSSAPRSHD ATNVTLSSND LADADILYTI 180 REHSHAVLKN PDQDFQSSSI TNYDDRSEES LHGLLFKSIF SHGESMIQFK KGLEEASKFL 240 PTDNRLAINT EDSKPSSEKK KGTTRTHENK EINMKSSSNG FKGLKNHERD ENAFEEGRAN 300 KQTALYTEES ELSDLFDKVL LGTKNGVGMS SGNEAAETGV RKDIQPQRNK HGSNSGSGCG 360 KKQGSKNTVD LRTLLILCAQ AISNSDFRTA NELLKQIREN SSPFGDASQR LAHYFANGLE 420 ARLMGNNVRG EVFYSTVVAR RTSAADILKS YHLHISTCPF NQFSMFFANY MILKFAEKAT 480 TLHIIDFGIA FGFQWPNLIQ KLSSRPGGPC KLRITGIELP QAGLRPAERI EETGCRLKKY 540 CERFDVPFEF NFIASRNWEF IKLADLKIQS NETVAVNCLD RFKNLDDTVE DNNPRDTVLY 600 LIRKIIPDIF VHAVRSGSYN AAFFETRFRE ALFEFSAVYD LLDATIDHNN KERLVIEREF 660 HGREIMNVIA CEGSRRIEKP ETYKQWQVRH VRAGFKALPL DQDFMKLFRG KMKAWYHKDF 720 VLDEDGNWML QCWRGRISFG SSCWVPT

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MISCLANDFL LDDPFLDLKS SDIAFVSKKV VKPVDLDNGD LILPSTIMSL DGGSFGPSRS  60
LRKGQSPERD SLPPSGDSDS LDPVLKYITQ MLMEENMEEQ PWVFADQVAL QNTEKSLYDA  120
LVQQNLQQSD QSSSQVDLSQ YIEGPNSNLS GSSSAPRSHD ATNVTLSSND LADADILYTI  180
REHSHAVLKN PDQDFQSSSI TNYDDRSEES LHGLLFKSIF SHGESMIQFK KGLEEASKFL  240
PTDNRLAINT EDSKPSSEKK KGTTRTHENK EINMKSSSNG FKGLKNHERD ENAFEEGRAN  300
KQTALYTEES ELSDLFDKVL LGTKNGVGMS SGNEAAETGV RKDIQPQRNK HGSNSGSGCG  360
KKQGSKNTVD LRTLLILCAQ AISNSDFRTA NELLKQIREN SSPFGDASQR LAHYFANGLE  420
ARLMGNNVRG EVFYSTVVAR RTSAADILKS YHLHISTCPF NQFSMFFANY MILKFAEKAT  480
TLHIIDFGIA FGFQWPNLIQ KLSSRPGGPC KLRITGIELP QAGLRPAERI EETGCRLKKY  540
CERFDVPFEF NFIASRNWEF IKLADLKIQS NETVAVNCLD RFKNLDDTVE DNNPRDTVLY  600
LIRKIIPDIF VHAVRSGSYN AAFFETRFRE ALFEFSAVYD LLDATIDHNN KERLVIEREF  660
HGREIMNVIA CEGSRRIEKP ETYKQWQVRH VRAGFKALPL DQDFMKLFRG KMKAWYHKDF  720
VLDEDGNWML QCWRGRISFG SSCWVPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-45	378	746	26	380	Protein SCARECROW
5b3h_A	5e-45	378	746	25	379	Protein SCARECROW
5b3h_D	5e-45	378	746	25	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018724295.1	0.0	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34
TrEMBL	A0A059D4Y9	0.0	A0A059D4Y9_EUCGR; Uncharacterized protein
STRING	XP_010043533.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14