PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC001251.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 453aa    MW: 49267.1 Da    PI: 5.3731
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC001251.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.91.2e-09262316963
                   CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   r  +NR +A rs +RK+ +i+eLe+kv++L+++ + L ++l  l+     l +e+
  EcC001251.10 262 RILSNRQSAARSKERKLRYIAELERKVQTLQTQATNLSSQLTVLQRDTTGLNTEN 316
                   5679************************************999988777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-12244318IPR004827Basic-leucine zipper domain
CDDcd147038.12E-23262308No hitNo description
PfamPF001703.9E-8262316IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.53262319IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-10262310No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-9262312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDNEMPHSHE GGTPSPDWST GFSQTNESFG DNSEQHASST LPLSVPAPTF VPEPGALGQG  60
AGETDSSQFG PDVGQMLDDP FMNLGHRRAH SEILIRPENG INVNGDHGVL GGGYEPIFPD  120
ENEEPDLYGI YLDMDRLNSS SAMTPLFQVE EPSSAAVALL SPPLPPPPAV AAPLAASTGP  180
ALVLGSGSAA VSAGERPRVK HHYSQSVDEL MTINPEMLAS SSEAPSGVDR KKALSAAKLA  240
ELALVDPRRA KRYYGNVFSG PRILSNRQSA ARSKERKLRY IAELERKVQT LQTQATNLSS  300
QLTVLQRDTT GLNTENHELK YRLQTMEQQV HLQDALNDAL KDEIEHLKVL TGQAMPNGAP  360
VMMPFAPFAH RPPFYPPYNS DPRPLFAAQQ LQQMQIQPPE MQHPFQVQHH PRPLQLQLPQ  420
LQQPTGGFSF GGPLHLAIQG DIHAADNSSD LRN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025885.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040888e-94POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A059AVA40.0A0A059AVA4_EUCGR; Uncharacterized protein
STRINGXP_010025885.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-83bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]